RASD1 (ras related dexamethasone induced 1)

Gene: RASD1 (ras related dexamethasone induced 1) Pan paniscus

Analyze

Symbol:

RASD1

Name:

ras related dexamethasone induced 1

RGD ID:

11881961

Description:

ENCODES a protein that exhibits G-protein beta-subunit binding (inferred); GTP binding (inferred); GTPase activity (inferred); INVOLVED IN negative regulation of DNA-templated transcription (ortholog); nitric oxide mediated signal transduction (ortholog); ASSOCIATED WITH autistic disorder (ortholog); Birt-Hogg-Dube syndrome (ortholog); common variable immunodeficiency 2 (ortholog); FOUND IN nucleus (ortholog); perinuclear region of cytoplasm (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

dexamethasone-induced Ras-related protein 1

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	19	52,010,264 - 52,012,705 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	17	56,722,268 - 56,724,716 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	17	33,799,204 - 33,801,652 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	17	38,746,452 - 38,748,134 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	17	38,744,157 - 38,748,134 (+)	Ensembl	panpan1.1		panPan2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autistic disorder (ISO)

Birt-Hogg-Dube syndrome (ISO)

common variable immunodeficiency 2 (ISO)

genetic disease (ISO)

Joubert syndrome 1 (ISO)

Potocki-Lupski syndrome (ISO)

Prostatic Neoplasms (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

negative regulation of DNA-templated transcription (ISO)

nitric oxide mediated signal transduction (ISO)

signal transduction (IEA)

Cellular Component

cytoplasm (IEA)

nucleus (ISO)

perinuclear region of cytoplasm (ISO)

plasma membrane (IEA)

sarcoplasmic reticulum (IEA)

Molecular Function

G-protein beta-subunit binding (IEA)

GTP binding (IEA)

GTPase activity (IEA)

nucleotide binding (IEA)

protein binding (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

RASD1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	19	52,010,264 - 52,012,705 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	17	56,722,268 - 56,724,716 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	17	33,799,204 - 33,801,652 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	17	38,746,452 - 38,748,134 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	17	38,744,157 - 38,748,134 (+)	Ensembl	panpan1.1		panPan2

RASD1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	17	17,494,437 - 17,496,395 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	17	17,494,437 - 17,496,395 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	17	17,397,751 - 17,399,709 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	17,338,476 - 17,340,432 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	17	17,338,479 - 17,340,432	NCBI
Celera	17	18,337,168 - 18,339,124 (-)	NCBI		Celera
Cytogenetic Map	17	p11.2	NCBI
HuRef	17	17,150,071 - 17,152,029 (-)	NCBI		HuRef
CHM1_1	17	17,406,422 - 17,408,380 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	17	17,441,046 - 17,443,004 (-)	NCBI		T2T-CHM13v2.0

Rasd1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	59,854,007 - 59,855,770 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	59,854,007 - 59,855,770 (-)	Ensembl		GRCm39 Ensembl
GRCm38	11	59,963,181 - 59,964,944 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	59,963,181 - 59,964,944 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	59,776,683 - 59,778,444 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	60,499,761 - 60,501,522 (-)	NCBI		MGSCv36	mm8
MGSCv36	11	59,779,376 - 59,781,137 (-)	NCBI		MGSCv36	mm8
Cytogenetic Map	11	B1.3	NCBI
cM Map	11	37.81	NCBI

Rasd1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	45,265,975 - 45,275,279 (-)	NCBI		GRCr8
mRatBN7.2	10	44,766,451 - 44,775,773 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	44,766,455 - 44,768,186 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	49,466,658 - 49,468,365 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	48,957,021 - 48,958,728 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	44,460,630 - 44,462,337 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	46,330,361 - 46,339,326 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	46,330,368 - 46,332,172 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	46,087,068 - 46,091,120 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	46,291,401 - 46,293,130 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	10	46,305,027 - 46,306,759 (-)	NCBI
Celera	10	44,026,788 - 44,028,495 (-)	NCBI		Celera
Cytogenetic Map	10	q22	NCBI

Rasd1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955577	452,993 - 454,713 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955577	452,993 - 454,659 (+)	NCBI	ChiLan1.0	ChiLan1.0

RASD1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	41,965,091 - 41,966,812 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	41,965,164 - 41,966,817 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	42,103,168 - 42,104,890 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	42,071,293 - 42,073,036 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	42,071,367 - 42,072,357 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	42,038,332 - 42,040,052 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	41,985,700 - 41,987,441 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	42,177,627 - 42,179,348 (+)	NCBI		UU_Cfam_GSD_1.0

Rasd1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	61,743,899 - 61,745,876 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936741	1,121,303 - 1,123,386 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936741	1,120,527 - 1,123,326 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RASD1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	60,922,474 - 60,924,250 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	12	60,922,466 - 60,924,255 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	12	63,134,258 - 63,136,035 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RASD1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	16,529,075 - 16,531,085 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	16	16,528,896 - 16,531,095 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666059	4,382,453 - 4,384,416 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Rasd1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624849	3,916,907 - 3,920,212 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624849	3,916,898 - 3,918,904 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003808773	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034942317	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JARIFH020000019	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSPPAT00000049488 ⟹ ENSPPAP00000026653

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	17	38,744,157 - 38,747,450 (+)	Ensembl

RefSeq Acc Id:

ENSPPAT00000049491 ⟹ ENSPPAP00000026656

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	17	38,746,452 - 38,748,134 (+)	Ensembl

RefSeq Acc Id:

XM_003808773 ⟹ XP_003808821

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	19	52,010,264 - 52,012,662 (-)	NCBI
NHGRI_mPanPan1	17	56,722,268 - 56,724,670 (-)	NCBI
Mhudiblu_PPA_v0	17	33,799,245 - 33,801,652 (+)	NCBI
PanPan1.1	17	38,746,452 - 38,748,134 (+)	NCBI

Sequence:

show sequence

CCGGCCAAGAACTGCTATCGCATGGTCATCCTCGGCTCGTCCAAGGTGGGCAAGACGGCCATCG
TGTCGCGCTTCCTCACCGGCCGCTTCGAGGACGCCTACACGCCTACCATCGAGGACTTCCACCG
CAAGTTCTACTCCATCCGCGGCGAGGTCTACCAGCTCGACATCCTCGACACGTCCGGCAACCAC
CCGTTCCCCGCCATGCGGCGCCTCTCCATCCTCACAGGAGACGTTTTCATCCTGGTGTTCAGTC
TGGACAACCGCGACTCCTTCGAGGAGGTGCAGCGGCTCAGGCAGCAGATCCTCGACACCAAGTC
TTGCCTCAAGAACAAAACCAAGGAGAACGTGGACGTGCCCCTGGTCATCTGCGGCAACAAGGGT
GACCGCGACTTCTACCGCGAGGTGGACCAGCGCGAGATCGAGCAGCTGGTGGGCGACGACCCCC
AGCGCTGCGCCTACTTCGAGATCTCGGCCAAGAAGAACAGCAGCCTGGACCAGATGTTCCGCGC
GCTCTTCGCCATGGCCAAGCTGCCCAGCGAGATGAGCCCAGACCTGCACCGCAAGGTCTCGGTG
CAGTACTGCGACGTGCTGCACAAGAAGGCGCTGCGGAACAAGAAGCTGCTGCGGGCCGGCAGCG
GCGGCGGCGGCGGCGACCCGGGCGACGCCTTTGGCATCGTGGCACCCTTCGCGCGCCGGCCCAG
CGTACACAGCGACCTCATGTACATCCGCGAGAAGGCCAGCGCCGGCAGCCAGGCCAAGGACAAG
GAGCGCTGCGTCATCAGCTAGGAGCCCCGCCGCGCTGCCGACACAACCTAAGGAGGACCTTTTT
GTTTAAAAGTCAAATCCAACGGCCCGGTGCGCCCCGGGCCGTGAGCGCGCGGACTGGCGTCTCC
CCTCCCGGCGATCCGCCCCCAGCACTGGGGAGGCGCCACTGAACCGAGAAGGGACGGTCATCTG
CTCCGGAAGGAAAGAGAACGGGCCAAGACTGGGACTATTCCCCACCCCCGGTCCCCCATTGAGG
CCCGCTACCCCCATAACTTTGGGAGCGAGGGCCCAGCCGAGGGTGGATTTATCTTCTCAAAGAC
CTAAGAGTGAGCGCGGGGTGGGGGAGGGATGTGAAGTTATCCAGCCTCTGCTAGGCTTCAAGAA
ACCGTCCTGCCCGCTTGAGGGTCAGGACCCACGGGGCATTATCTTGTCTGTGATTCCGGGTTGC
TGTGACAGCCGGTAGAGCCTCTGCCCTCCCGAAACTAAGCGGGGGGGCGTGGGTCAAATCATAG
CCAAGTGACTTGTTTACATGTGAGTGAAACTGCACAAAGGAACACAAAACTTGCACTTTAACGG
TAGTTCCGGTGTCAACATGGACACGAACAAAACCTTACCCAGGTGTTTATACTGTGTGTGTGTG
AGGTCTTTAAAGTTATTGCTTTATTTGGTTTTTTAATATACAATAAAATAATTTAAAATGGAAA
A

hide sequence

RefSeq Acc Id:

XM_034942317 ⟹ XP_034798208

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	19	52,011,351 - 52,012,705 (-)	NCBI
NHGRI_mPanPan1	17	56,723,355 - 56,724,716 (-)	NCBI
Mhudiblu_PPA_v0	17	33,799,204 - 33,800,565 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_003808821	(Get FASTA)	NCBI Sequence Viewer
	XP_034798208	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSPPAP00000026653.1
	ENSPPAP00000026656.1

RefSeq Acc Id:	XP_003808821 ⟸ XM_003808773
- Peptide Label:	isoform X1
- UniProtKB:	A0A2R9BED0 (UniProtKB/TrEMBL)
- Sequence:	show sequence PAKNCYRMVILGSSKVGKTAIVSRFLTGRFEDAYTPTIEDFHRKFYSIRGEVYQLDILDTSGNH PFPAMRRLSILTGDVFILVFSLDNRDSFEEVQRLRQQILDTKSCLKNKTKENVDVPLVICGNKG DRDFYREVDQREIEQLVGDDPQRCAYFEISAKKNSSLDQMFRALFAMAKLPSEMSPDLHRKVSV QYCDVLHKKALRNKKLLRAGSGGGGGDPGDAFGIVAPFARRPSVHSDLMYIREKASAGSQAKDK ERCVIS hide sequence

RefSeq Acc Id:	XP_034798208 ⟸ XM_034942317
- Peptide Label:	isoform X2

RefSeq Acc Id:

ENSPPAP00000026656 ⟸ ENSPPAT00000049491

RefSeq Acc Id:

ENSPPAP00000026653 ⟸ ENSPPAT00000049488

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSPPAG00000036409	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSPPAT00000049488.1	UniProtKB/TrEMBL
	ENSPPAT00000049491.1	UniProtKB/TrEMBL
Gene3D-CATH	3.40.50.300	UniProtKB/TrEMBL
InterPro	P-loop_NTPase	UniProtKB/TrEMBL
	Small_GTP-bd_dom	UniProtKB/TrEMBL
	Small_GTPase	UniProtKB/TrEMBL
NCBI Gene	RASD1	ENTREZGENE
PANTHER	DEXAMETHASONE-INDUCED RAS-RELATED PROTEIN 1	UniProtKB/TrEMBL
	MIP08469P	UniProtKB/TrEMBL
Pfam	Ras	UniProtKB/TrEMBL
PRINTS	RASTRNSFRMNG	UniProtKB/TrEMBL
PROSITE	RAB	UniProtKB/TrEMBL
	RAS	UniProtKB/TrEMBL
	RHO	UniProtKB/TrEMBL
SMART	RAB	UniProtKB/TrEMBL
	RAN	UniProtKB/TrEMBL
	RAS	UniProtKB/TrEMBL
	RHO	UniProtKB/TrEMBL
Superfamily-SCOP	SSF52540	UniProtKB/TrEMBL
UniProt	A0A2R9BAL4_PANPA	UniProtKB/TrEMBL
	A0A2R9BED0	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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