C1QTNF5 (C1q and TNF related 5) - Rat Genome Database
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: C1QTNF5 (C1q and TNF related 5) Pan paniscus
Analyze
Symbol: C1QTNF5
Name: C1q and TNF related 5
RGD ID: 11880623
Description: ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN inner ear development (ortholog); protein secretion (ortholog); ASSOCIATED WITH Dwarfism (ortholog); fundus dystrophy (ortholog); isolated microphthalmia 5 (ortholog); FOUND IN apical plasma membrane (ortholog); bicellular tight junction (ortholog); cell projection (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: C1q and tumor necrosis factor related protein 5; complement C1q tumor necrosis factor-related protein 5; LOW QUALITY PROTEIN: complement C1q tumor necrosis factor-related protein 5
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.111118,107,317 - 118,108,798 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11118,107,706 - 118,108,774 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v011114,179,998 - 114,187,761 (-)NCBIMhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
C1QTNF5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.111118,107,317 - 118,108,798 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11118,107,706 - 118,108,774 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v011114,179,998 - 114,187,761 (-)NCBIMhudiblu_PPA_v0panPan3
C1QTNF5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl11119,338,942 - 119,340,940 (-)EnsemblGRCh38hg38GRCh38
GRCh3811119,338,942 - 119,346,705 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh3711119,209,652 - 119,217,415 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3611118,714,862 - 118,716,791 (-)NCBINCBI36hg18NCBI36
Build 3411118,714,861 - 118,716,791NCBI
Celera11116,370,323 - 116,378,054 (-)NCBI
Cytogenetic Map11q23.3NCBI
HuRef11115,150,343 - 115,158,082 (-)NCBIHuRef
CHM1_111119,096,203 - 119,103,942 (-)NCBICHM1_1
C1qtnf5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39944,013,067 - 44,020,484 (+)NCBIGRCm39mm39
GRCm39 Ensembl944,018,542 - 44,020,484 (+)Ensembl
GRCm38944,101,770 - 44,109,187 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl944,107,245 - 44,109,187 (+)EnsemblGRCm38mm10GRCm38
MGSCv37943,909,853 - 43,917,270 (+)NCBIGRCm37mm9NCBIm37
MGSCv36943,852,837 - 43,860,182 (+)NCBImm8
Celera941,359,597 - 41,367,008 (+)NCBICelera
Cytogenetic Map9A5.1NCBI
cM Map924.62NCBI
C1qtnf5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2844,450,934 - 44,453,075 (+)NCBI
Rnor_6.0 Ensembl848,443,767 - 48,445,637 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0848,443,515 - 48,445,639 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0847,059,344 - 47,061,466 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4847,089,564 - 47,091,434 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1847,098,329 - 47,100,200 (+)NCBI
Celera844,038,402 - 44,040,272 (+)NCBICelera
Cytogenetic Map8q22NCBI
C1qtnf5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541220,415,287 - 20,421,541 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541220,419,754 - 20,421,541 (-)NCBIChiLan1.0ChiLan1.0
C1QTNF5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl514,562,350 - 14,563,309 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1514,561,115 - 14,563,277 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
C1qtnf5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365424,269,636 - 4,271,497 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
C1QTNF5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1946,548,175 - 46,550,146 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2951,582,420 - 51,584,391 (-)NCBISscrofa10.2Sscrofa10.2susScr3
C1QTNF5
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11110,717,909 - 110,720,454 (-)NCBI
ChlSab1.1 Ensembl1110,718,294 - 110,719,361 (-)Ensembl
C1qtnf5
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462478414,707,453 - 14,709,609 (-)NCBI


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_034933890 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide SSBP01000210 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSPPAT00000013007   ⟹   ENSPPAP00000002744
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl11118,107,706 - 118,108,774 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000013068   ⟹   ENSPPAP00000002751
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl11118,107,706 - 118,108,774 (-)Ensembl
RefSeq Acc Id: XM_034933890   ⟹   XP_034789781
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v011114,179,998 - 114,187,761 (-)NCBI
Protein Sequences
Protein RefSeqs XP_034789781 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_034789781   ⟸   XM_034933890
RefSeq Acc Id: ENSPPAP00000002744   ⟸   ENSPPAT00000013007
RefSeq Acc Id: ENSPPAP00000002751   ⟸   ENSPPAT00000013068
Protein Domains
C1q


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000011910 Ensembl, UniProtKB/TrEMBL
Ensembl Protein ENSPPAP00000002744 UniProtKB/TrEMBL
  ENSPPAP00000002751 UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000013007 UniProtKB/TrEMBL
  ENSPPAT00000013068 UniProtKB/TrEMBL
Gene3D-CATH 2.60.120.40 UniProtKB/TrEMBL
InterPro C1q_dom UniProtKB/TrEMBL
  Collagen UniProtKB/TrEMBL
  Tumour_necrosis_fac-like_dom UniProtKB/TrEMBL
NCBI Gene C1QTNF5 ENTREZGENE
Pfam C1q UniProtKB/TrEMBL
  Collagen UniProtKB/TrEMBL
PRINTS COMPLEMNTC1Q UniProtKB/TrEMBL
PROSITE C1Q UniProtKB/TrEMBL
SMART C1Q UniProtKB/TrEMBL
Superfamily-SCOP SSF49842 UniProtKB/TrEMBL
UniProt A0A2R8ZCG5_PANPA UniProtKB/TrEMBL
  A0A2R8ZJ92_PANPA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-03-08 C1QTNF5  C1q and TNF related 5    C1q and tumor necrosis factor related protein 5  Symbol and/or name change 5135510 APPROVED