CDSN (corneodesmosin) - Rat Genome Database

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Gene: CDSN (corneodesmosin) Pan paniscus
Analyze
Symbol: CDSN
Name: corneodesmosin
RGD ID: 11880577
Description: ENCODES a protein that exhibits protein homodimerization activity (ortholog); INVOLVED IN amyloid fibril formation (ortholog); cell-cell adhesion (ortholog); corneocyte desquamation (ortholog); ASSOCIATED WITH alopecia (ortholog); atopic dermatitis (ortholog); hypotrichosis 2 (ortholog); FOUND IN cornified envelope (ortholog); cytoplasm (ortholog); desmosome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1631,726,602 - 31,731,976 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl631,727,090 - 31,731,976 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0630,861,199 - 30,867,082 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
CDSN
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1631,726,602 - 31,731,976 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl631,727,090 - 31,731,976 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0630,861,199 - 30,867,082 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
CDSN
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38631,115,087 - 31,120,446 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl631,115,087 - 31,120,446 (-)EnsemblGRCh38hg38GRCh38
GRCh37631,082,864 - 31,088,223 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36631,190,849 - 31,196,202 (-)NCBINCBI36Build 36hg18NCBI36
Build 34631,191,339 - 31,196,189NCBI
Celera632,683,083 - 32,688,466 (-)NCBICelera
Cytogenetic Map6p21.33NCBI
HuRef630,885,378 - 30,890,761 (-)NCBIHuRef
CHM1_1631,084,956 - 31,090,339 (-)NCBICHM1_1
T2T-CHM13v2.0630,982,815 - 30,988,170 (-)NCBIT2T-CHM13v2.0
Cdsn
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391735,853,994 - 35,868,077 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1735,863,025 - 35,868,077 (+)EnsemblGRCm39 Ensembl
GRCm381735,543,101 - 35,557,180 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1735,552,128 - 35,557,180 (+)EnsemblGRCm38mm10GRCm38
MGSCv371735,689,073 - 35,694,125 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361735,160,194 - 35,165,233 (+)NCBIMGSCv36mm8
Celera1739,067,633 - 39,072,920 (+)NCBICelera
Cytogenetic Map17B1NCBI
Cdsn
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2203,179,432 - 3,185,854 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl203,179,438 - 3,184,250 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx203,240,743 - 3,245,574 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0203,245,714 - 3,250,545 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0203,269,983 - 3,274,788 (-)NCBIRnor_WKY
Rnor_6.0203,704,626 - 3,707,266 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0205,792,983 - 5,795,590 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera20606,557 - 612,794 (-)NCBICelera
Cytogenetic Map20p12NCBI
Cdsn
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955583958,668 - 964,149 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955583959,544 - 968,632 (-)NCBIChiLan1.0ChiLan1.0
CDSN
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.112819,488 - 824,015 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl12820,467 - 823,986 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha12952,855 - 961,585 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.012128,294 - 132,529 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl12127,597 - 132,340 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.112823,625 - 827,971 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.012891,795 - 896,141 (-)NCBIUNSW_CanFamBas_1.0
Cdsn
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494634,421,192 - 34,426,175 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936837787,301 - 791,388 (-)EnsemblSpeTri2.0
SpeTri2.0NW_004936837787,035 - 791,388 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CDSN
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl723,520,142 - 23,524,372 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1723,520,142 - 23,524,372 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2727,309,334 - 27,313,556 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CDSN
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11741,352,063 - 41,359,344 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604430,808,711 - 30,814,631 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cdsn
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475424,796,341 - 24,799,913 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475424,796,308 - 24,800,324 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003807332 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide SSBP01000293 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSPPAT00000030221   ⟹   ENSPPAP00000007676
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl631,727,090 - 31,731,976 (-)Ensembl
RefSeq Acc Id: XM_003807332   ⟹   XP_003807380
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1631,726,602 - 31,731,976 (-)NCBI
Mhudiblu_PPA_v0630,861,199 - 30,867,082 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003807380 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_003807380   ⟸   XM_003807332
- Sequence:
RefSeq Acc Id: ENSPPAP00000007676   ⟸   ENSPPAT00000030221


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000026997 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSPPAP00000007676.1 UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000030221.1 UniProtKB/TrEMBL
InterPro Corneodesmosin UniProtKB/TrEMBL
KEGG Report pps:100994773 UniProtKB/TrEMBL
NCBI Gene CDSN ENTREZGENE
PANTHER PTHR23207 UniProtKB/TrEMBL
UniProt A0A2R8ZXM2_PANPA UniProtKB/TrEMBL