RAVER1 (ribonucleoprotein, PTB binding 1) - Rat Genome Database

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Gene: RAVER1 (ribonucleoprotein, PTB binding 1) Pan paniscus
Analyze
Symbol: RAVER1
Name: ribonucleoprotein, PTB binding 1
RGD ID: 11879124
Description: ENCODES a protein that exhibits RNA binding (inferred); ASSOCIATED WITH genetic disease (ortholog); FOUND IN nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ribonucleoprotein PTB-binding 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22015,233,194 - 15,251,001 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11914,231,824 - 14,249,612 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0199,866,631 - 9,883,833 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11910,532,355 - 10,549,142 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1910,532,362 - 10,549,142 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleus  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
RAVER1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22015,233,194 - 15,251,001 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11914,231,824 - 14,249,612 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0199,866,631 - 9,883,833 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11910,532,355 - 10,549,142 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1910,532,362 - 10,549,142 (-)Ensemblpanpan1.1panPan2
RAVER1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381910,316,212 - 10,333,529 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1910,316,212 - 10,333,529 (-)EnsemblGRCh38hg38GRCh38
GRCh371910,426,888 - 10,444,205 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361910,287,888 - 10,305,314 (-)NCBINCBI36Build 36hg18NCBI36
Celera1910,322,277 - 10,339,705 (-)NCBICelera
Cytogenetic Map19p13.2NCBI
HuRef1910,007,146 - 10,024,575 (-)NCBIHuRef
CHM1_11910,427,421 - 10,444,848 (-)NCBICHM1_1
T2T-CHM13v2.01910,442,322 - 10,459,641 (-)NCBIT2T-CHM13v2.0
Raver1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39920,985,454 - 21,003,295 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl920,985,454 - 21,003,304 (-)EnsemblGRCm39 Ensembl
GRCm38921,074,158 - 21,091,999 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl921,074,158 - 21,092,008 (-)EnsemblGRCm38mm10GRCm38
MGSCv37920,878,602 - 20,896,432 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36920,817,922 - 20,842,389 (-)NCBIMGSCv36mm8
Celera918,342,872 - 18,360,702 (-)NCBICelera
Cytogenetic Map9A3NCBI
cM Map97.71NCBI
Raver1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8827,886,641 - 27,907,192 (-)NCBIGRCr8
mRatBN7.2819,610,464 - 19,629,188 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl819,610,466 - 19,629,152 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx823,629,875 - 23,648,565 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0821,927,729 - 21,946,421 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0819,840,134 - 19,858,824 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0822,092,084 - 22,111,863 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl822,092,094 - 22,111,863 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0822,148,754 - 22,168,072 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4820,096,974 - 20,115,289 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1820,096,980 - 20,115,289 (-)NCBI
Celera821,004,887 - 21,023,576 (-)NCBICelera
Cytogenetic Map8q13NCBI
Raver1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554951,594,531 - 1,610,412 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554951,594,864 - 1,609,251 (-)NCBIChiLan1.0ChiLan1.0
RAVER1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12050,784,068 - 50,798,303 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2050,653,826 - 50,668,049 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02051,305,704 - 51,319,929 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2051,304,534 - 51,319,931 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12050,511,848 - 50,526,071 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02050,940,625 - 50,954,836 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02051,181,734 - 51,195,963 (+)NCBIUU_Cfam_GSD_1.0
Raver1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118209,687,391 - 209,704,240 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936659650,473 - 667,382 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936659650,463 - 667,379 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RAVER1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.169,364,903 - 9,387,874 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl69,366,151 - 9,383,633 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607410,655,263 - 10,673,534 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Raver1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248282,474,217 - 2,487,927 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248282,473,824 - 2,486,967 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000003251   ⟹   ENSPPAP00000000711
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1910,532,362 - 10,549,142 (-)Ensembl
RefSeq Acc Id: XM_003809590   ⟹   XP_003809638
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22015,233,194 - 15,251,001 (-)NCBI
NHGRI_mPanPan11914,231,824 - 14,249,612 (-)NCBI
Mhudiblu_PPA_v0199,866,631 - 9,883,833 (-)NCBI
PanPan1.11910,532,355 - 10,549,142 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008961860   ⟹   XP_008960108
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22015,233,194 - 15,251,001 (-)NCBI
NHGRI_mPanPan11914,231,824 - 14,249,612 (-)NCBI
Mhudiblu_PPA_v0199,866,631 - 9,883,833 (-)NCBI
PanPan1.11910,532,355 - 10,549,142 (-)NCBI
Sequence:
RefSeq Acc Id: XM_063599867   ⟹   XP_063455937
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22015,233,194 - 15,251,001 (-)NCBI
Protein Sequences
Protein RefSeqs XP_003809638 (Get FASTA)   NCBI Sequence Viewer  
  XP_008960108 (Get FASTA)   NCBI Sequence Viewer  
  XP_063455937 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000000711.1
Reference Protein Sequences
RefSeq Acc Id: XP_008960108   ⟸   XM_008961860
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_003809638   ⟸   XM_003809590
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSPPAP00000000711   ⟸   ENSPPAT00000003251
RefSeq Acc Id: XP_063455937   ⟸   XM_063599867
- Peptide Label: isoform X1
Protein Domains
RRM


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000002611 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000003251.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.330 UniProtKB/TrEMBL
InterPro Nucleotide-bd_a/b_plait_sf UniProtKB/TrEMBL
  RAVER1 UniProtKB/TrEMBL
  RAVER1_RRM1 UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/TrEMBL
  RRM_dom UniProtKB/TrEMBL
KEGG Report pps:100979766 UniProtKB/TrEMBL
NCBI Gene RAVER1 ENTREZGENE
PANTHER RIBONUCLEOPROTEIN PTB-BINDING 1 UniProtKB/TrEMBL
  RNA RECOGNITION MOTIF-CONTAINING UniProtKB/TrEMBL
Pfam RRM_1 UniProtKB/TrEMBL
PROSITE RRM UniProtKB/TrEMBL
SMART RRM UniProtKB/TrEMBL
Superfamily-SCOP SSF54928 UniProtKB/TrEMBL
UniProt A0A2R8ZDL0_PANPA UniProtKB/TrEMBL