SMIM27 (small integral membrane protein 27) - Rat Genome Database

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Gene: SMIM27 (small integral membrane protein 27) Pan paniscus
Analyze
Symbol: SMIM27
Name: small integral membrane protein 27
RGD ID: 11878963
Description: ASSOCIATED WITH genetic disease (ortholog); retinitis pigmentosa (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC100969960; uncharacterized LOC100969960
RGD Orthologs
Human
Mouse
Rat
Squirrel
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21192,062,002 - 92,063,929 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1992,067,934 - 92,069,871 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0932,326,289 - 32,327,313 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1933,135,305 - 33,137,179 (+)NCBIpanpan1.1PanPan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References

Genomics

Comparative Map Data
SMIM27
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21192,062,002 - 92,063,929 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1992,067,934 - 92,069,871 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0932,326,289 - 32,327,313 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1933,135,305 - 33,137,179 (+)NCBIpanpan1.1PanPan1.1panPan2
SMIM27
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38932,551,144 - 32,566,860 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl932,551,144 - 32,568,621 (+)EnsemblGRCh38hg38GRCh38
GRCh37932,551,142 - 32,566,858 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36932,541,771 - 32,543,005 (+)NCBINCBI36Build 36hg18NCBI36
Celera932,482,348 - 32,484,221 (+)NCBICelera
Cytogenetic Map9p21.1NCBI
HuRef932,507,921 - 32,523,660 (+)NCBIHuRef
CHM1_1932,551,175 - 32,566,911 (+)NCBICHM1_1
T2T-CHM13v2.0932,567,306 - 32,583,045 (+)NCBIT2T-CHM13v2.0
Smim27
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39440,269,579 - 40,270,228 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl440,269,579 - 40,270,940 (+)EnsemblGRCm39 Ensembl
GRCm38440,269,579 - 40,270,228 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl440,269,579 - 40,270,940 (+)EnsemblGRCm38mm10GRCm38
MGSCv37440,216,610 - 40,217,261 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Celera439,932,582 - 39,933,233 (+)NCBICelera
Cytogenetic Map4A5NCBI
cM Map420.24NCBI
Smim27
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8560,195,679 - 60,196,346 (+)NCBIGRCr8
mRatBN7.2555,399,637 - 55,400,304 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl555,398,723 - 55,400,869 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx557,365,524 - 57,366,191 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0559,184,666 - 59,185,333 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0559,156,388 - 59,157,055 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0556,565,237 - 56,566,870 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0561,109,127 - 61,110,764 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera554,014,686 - 54,016,319 (+)NCBICelera
Cytogenetic Map5q22NCBI
Smim27
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947164,681,878 - 164,682,894 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365241,229,722 - 1,230,211 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365241,229,556 - 1,230,474 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SMIM27
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11247,702,117 - 47,702,631 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603844,594,450 - 44,595,590 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_034967290   ⟹   XP_034823181
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21192,062,002 - 92,063,929 (-)NCBI
NHGRI_mPanPan1992,067,934 - 92,069,871 (-)NCBI
Mhudiblu_PPA_v0932,326,289 - 32,327,313 (+)NCBI
RefSeq Acc Id: XM_055092063   ⟹   XP_054948038
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21192,062,002 - 92,063,929 (-)NCBI
NHGRI_mPanPan1992,067,934 - 92,069,871 (-)NCBI
Protein Sequences
Protein RefSeqs XP_034823181 (Get FASTA)   NCBI Sequence Viewer  
  XP_054948038 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_034823181   ⟸   XM_034967290
RefSeq Acc Id: XP_054948038   ⟸   XM_055092063


Additional Information

Database Acc Id Source(s)
NCBI Gene LOC100969960 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-05-08 SMIM27  small integral membrane protein 27  LOC100969960  uncharacterized LOC100969960  Symbol and/or name change 5135510 APPROVED