PRPF19 (pre-mRNA processing factor 19) - Rat Genome Database

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Gene: PRPF19 (pre-mRNA processing factor 19) Pan paniscus
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Symbol: PRPF19
Name: pre-mRNA processing factor 19
RGD ID: 11877575
Description: ENCODES a protein that exhibits identical protein binding (inferred); transferase activity (inferred); ubiquitin protein ligase activity (inferred); INVOLVED IN inner cell mass cell proliferation (ortholog); lipid biosynthetic process (ortholog); negative regulation of neuron differentiation (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH Disease Progression (ortholog); familial temporal lobe epilepsy 8 (ortholog); Hydrops Fetalis (ortholog); FOUND IN DNA replication factor A complex (ortholog); Prp19 complex (ortholog); spliceosomal complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: pre-mRNA-processing factor 19; PRP19/PSO4 pre-mRNA processing factor 19 homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11159,594,508 - 59,610,544 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1159,595,120 - 59,607,828 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01156,153,965 - 56,169,821 (-)NCBIMhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
PRPF19
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11159,594,508 - 59,610,544 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1159,595,120 - 59,607,828 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01156,153,965 - 56,169,821 (-)NCBIMhudiblu_PPA_v0panPan3
PRPF19
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381160,890,547 - 60,906,585 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1160,890,547 - 60,906,585 (-)EnsemblGRCh38hg38GRCh38
GRCh371160,658,019 - 60,674,057 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361160,414,778 - 60,430,632 (-)NCBINCBI36hg18NCBI36
Build 341160,414,779 - 60,430,632NCBI
Celera1158,018,905 - 58,034,947 (-)NCBI
Cytogenetic Map11q12.2NCBI
HuRef1157,004,177 - 57,020,231 (-)NCBIHuRef
CHM1_11160,524,333 - 60,540,362 (-)NCBICHM1_1
Prpf19
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391910,872,595 - 10,886,923 (+)NCBIGRCm39mm39
GRCm39 Ensembl1910,872,595 - 10,886,923 (+)Ensembl
GRCm381910,895,231 - 10,909,559 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1910,895,231 - 10,909,559 (+)EnsemblGRCm38mm10GRCm38
MGSCv371910,969,782 - 10,980,022 (+)NCBIGRCm37mm9NCBIm37
MGSCv361910,962,337 - 10,972,577 (+)NCBImm8
Celera1911,588,283 - 11,598,524 (+)NCBICelera
Cytogenetic Map19ANCBI
cM Map197.33NCBI
Prpf19
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21207,541,582 - 207,552,664 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1207,541,595 - 207,552,662 (+)Ensembl
Rnor_6.01226,947,065 - 226,958,147 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1226,947,105 - 226,958,144 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01234,012,625 - 234,023,696 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41213,390,564 - 213,401,943 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11213,548,971 - 213,560,061 (+)NCBI
Celera1205,034,192 - 205,044,837 (+)NCBICelera
Cytogenetic Map1q43NCBI
Prpf19
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555115,545,989 - 5,557,792 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555115,546,212 - 5,552,368 (-)NCBIChiLan1.0ChiLan1.0
PRPF19
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11855,389,902 - 55,400,241 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1855,389,897 - 55,400,240 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1853,963,071 - 53,973,417 (+)NCBI
ROS_Cfam_1.01856,438,338 - 56,448,620 (+)NCBI
ROS_Cfam_1.0 Ensembl1856,438,256 - 56,448,616 (+)Ensembl
UMICH_Zoey_3.11855,495,828 - 55,506,178 (+)NCBI
UNSW_CanFamBas_1.01855,117,335 - 55,127,674 (+)NCBI
UU_Cfam_GSD_1.01855,998,460 - 56,008,827 (+)NCBI
Prpf19
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494711,918,067 - 11,928,483 (+)NCBI
SpeTri2.0NW_0049365812,031,894 - 2,042,294 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PRPF19
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl210,851,579 - 10,860,838 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1210,851,779 - 10,860,315 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2210,457,428 - 10,465,965 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PRPF19
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1112,942,238 - 12,958,853 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl112,942,213 - 12,959,947 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666038110,310,291 - 110,326,283 (+)NCBIVero_WHO_p1.0
Prpf19
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624926268,965 - 274,634 (-)NCBIHetGla_female_1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000036951   ⟹   ENSPPAP00000014271
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1159,595,120 - 59,607,828 (-)Ensembl
RefSeq Acc Id: XM_003826325   ⟹   XP_003826373
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.11159,594,508 - 59,610,544 (-)NCBI
Mhudiblu_PPA_v01156,153,965 - 56,169,821 (-)NCBI
Sequence:
RefSeq Acc Id: XM_034932706   ⟹   XP_034788597
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v01156,154,338 - 56,169,812 (-)NCBI
RefSeq Acc Id: XM_034932707   ⟹   XP_034788598
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v01156,154,338 - 56,168,544 (-)NCBI
Protein Sequences
Protein RefSeqs XP_003826373 (Get FASTA)   NCBI Sequence Viewer  
  XP_034788597 (Get FASTA)   NCBI Sequence Viewer  
  XP_034788598 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_003826373   ⟸   XM_003826325
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_034788597   ⟸   XM_034932706
- Peptide Label: isoform X2
RefSeq Acc Id: XP_034788598   ⟸   XM_034932707
- Peptide Label: isoform X2
RefSeq Acc Id: ENSPPAP00000014271   ⟸   ENSPPAT00000036951
Protein Domains
Ricin B-type lectin   U-box


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000030246 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSPPAP00000014271 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000036951 UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.10 UniProtKB/TrEMBL
  3.30.40.10 UniProtKB/TrEMBL
InterPro G-protein_beta_WD-40_rep UniProtKB/TrEMBL
  Pre-mRNA_splic_Prp19 UniProtKB/TrEMBL
  Prp19 UniProtKB/TrEMBL
  Ricin_B_lectin UniProtKB/TrEMBL
  Ubox_domain UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom_sf UniProtKB/TrEMBL
  WD40_repeat UniProtKB/TrEMBL
  WD40_repeat_CS UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
NCBI Gene PRPF19 ENTREZGENE
PANTHER PTHR43995 UniProtKB/TrEMBL
Pfam Prp19 UniProtKB/TrEMBL
  U-box UniProtKB/TrEMBL
  WD40 UniProtKB/TrEMBL
PRINTS GPROTEINBRPT UniProtKB/TrEMBL
PROSITE RICIN_B_LECTIN UniProtKB/TrEMBL
  U_BOX UniProtKB/TrEMBL
  WD_REPEATS_1 UniProtKB/TrEMBL
  WD_REPEATS_2 UniProtKB/TrEMBL
SMART Ubox UniProtKB/TrEMBL
  WD40 UniProtKB/TrEMBL
Superfamily-SCOP SSF50978 UniProtKB/TrEMBL
UniProt A0A2R9ABK4_PANPA UniProtKB/TrEMBL