ZFYVE21 (zinc finger FYVE-type containing 21) - Rat Genome Database

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Gene: ZFYVE21 (zinc finger FYVE-type containing 21) Pan paniscus
Analyze
Symbol: ZFYVE21
Name: zinc finger FYVE-type containing 21
RGD ID: 11874843
Description: ENCODES a protein that exhibits metal ion binding (inferred); ASSOCIATED WITH Charcot-Marie-Tooth disease axonal type 2O (ortholog); coronary artery disease (ortholog); genetic disease (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: zinc finger FYVE domain-containing protein 21
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v215104,874,979 - 104,892,848 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan114104,091,481 - 104,109,354 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01484,341,941 - 84,359,831 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.114104,161,904 - 104,168,787 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl14104,161,904 - 104,168,787 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
ZFYVE21
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v215104,874,979 - 104,892,848 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan114104,091,481 - 104,109,354 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01484,341,941 - 84,359,831 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.114104,161,904 - 104,168,787 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl14104,161,904 - 104,168,787 (+)Ensemblpanpan1.1panPan2
ZFYVE21
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3814103,715,810 - 103,733,664 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl14103,715,730 - 103,733,668 (+)EnsemblGRCh38hg38GRCh38
GRCh3714104,182,147 - 104,200,001 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3614103,251,898 - 103,269,752 (+)NCBINCBI36Build 36hg18NCBI36
Build 3414103,251,897 - 103,269,751NCBI
Celera1484,236,401 - 84,254,256 (+)NCBICelera
Cytogenetic Map14q32.33NCBI
HuRef1484,360,391 - 84,378,316 (+)NCBIHuRef
CHM1_114104,120,235 - 104,138,173 (+)NCBICHM1_1
T2T-CHM13v2.01497,951,867 - 97,969,731 (+)NCBIT2T-CHM13v2.0
Zfyve21
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3912111,780,600 - 111,794,822 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl12111,780,604 - 111,798,626 (+)EnsemblGRCm39 Ensembl
GRCm3812111,814,166 - 111,828,388 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl12111,814,170 - 111,832,192 (+)EnsemblGRCm38mm10GRCm38
MGSCv3712113,052,481 - 113,066,287 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3612112,262,048 - 112,276,194 (+)NCBIMGSCv36mm8
Celera12113,018,844 - 113,036,868 (+)NCBICelera
Cytogenetic Map12F1NCBI
cM Map1261.14NCBI
Zfyve21
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86136,695,132 - 136,715,601 (+)NCBIGRCr8
mRatBN7.26130,873,979 - 130,894,618 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6130,873,912 - 130,894,411 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx6131,047,358 - 131,067,823 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06131,344,329 - 131,364,794 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06130,704,029 - 130,724,484 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.06136,380,968 - 136,400,810 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6136,380,990 - 136,400,810 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06145,388,945 - 145,408,787 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46136,603,711 - 136,623,531 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.16136,609,943 - 136,626,505 (+)NCBI
Celera6128,427,856 - 128,447,676 (+)NCBICelera
Cytogenetic Map6q32NCBI
Zfyve21
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555382,509,506 - 2,519,676 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555382,509,506 - 2,519,682 (+)NCBIChiLan1.0ChiLan1.0
ZFYVE21
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1871,451,968 - 71,462,244 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl871,451,999 - 71,461,938 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha870,965,098 - 70,975,370 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0871,730,727 - 71,741,005 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl871,730,738 - 71,741,005 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1871,419,386 - 71,429,952 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0871,459,814 - 71,470,377 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0871,858,469 - 71,868,979 (+)NCBIUU_Cfam_GSD_1.0
Zfyve21
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244086402,618,502 - 2,633,222 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366211,446,099 - 1,462,219 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366211,447,459 - 1,462,179 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZFYVE21
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa10.27130,821,382 - 130,829,315 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ZFYVE21
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12481,644,466 - 81,663,017 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2481,644,493 - 81,662,376 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605368,958,017 - 68,976,595 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Zfyve21
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247341,206,218 - 1,216,508 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247341,205,742 - 1,216,398 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000055170   ⟹   ENSPPAP00000032304
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl14104,161,904 - 104,168,787 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000055173   ⟹   ENSPPAP00000032307
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl14104,161,904 - 104,168,787 (+)Ensembl
RefSeq Acc Id: XM_034938246   ⟹   XP_034794137
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v215104,874,979 - 104,892,848 (+)NCBI
NHGRI_mPanPan114104,091,482 - 104,109,354 (+)NCBI
Mhudiblu_PPA_v01484,341,941 - 84,359,831 (+)NCBI
RefSeq Acc Id: XM_034938247   ⟹   XP_034794138
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v215104,874,979 - 104,892,848 (+)NCBI
NHGRI_mPanPan114104,091,481 - 104,109,354 (+)NCBI
Mhudiblu_PPA_v01484,341,965 - 84,359,829 (+)NCBI
Protein Sequences
Protein RefSeqs XP_034794137 (Get FASTA)   NCBI Sequence Viewer  
  XP_034794138 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000032304.1
  ENSPPAP00000032307.1
Reference Protein Sequences
RefSeq Acc Id: XP_034794137   ⟸   XM_034938246
- Peptide Label: isoform X1
- UniProtKB: A0A2R9C0M3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034794138   ⟸   XM_034938247
- Peptide Label: isoform X2
- UniProtKB: A0A2R9BRJ6 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSPPAP00000032307   ⟸   ENSPPAT00000055173
RefSeq Acc Id: ENSPPAP00000032304   ⟸   ENSPPAT00000055170
Protein Domains
FYVE-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000039040 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000055170.1 UniProtKB/TrEMBL
  ENSPPAT00000055173.1 UniProtKB/TrEMBL
Gene3D-CATH 2.30.29.160 UniProtKB/TrEMBL
  3.30.40.10 UniProtKB/TrEMBL
InterPro ZFYVE21_C UniProtKB/TrEMBL
  ZFYVE21_C_sf UniProtKB/TrEMBL
  Znf_FYVE UniProtKB/TrEMBL
  Znf_FYVE-rel UniProtKB/TrEMBL
  Znf_FYVE_PHD UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
NCBI Gene ZFYVE21 ENTREZGENE
PANTHER ARRESTIN DOMAIN-CONTAINING PROTEIN D UniProtKB/TrEMBL
  ZINC FINGER FYVE DOMAIN-CONTAINING PROTEIN 21 UniProtKB/TrEMBL
Pfam FYVE UniProtKB/TrEMBL
  ZFYVE21_C UniProtKB/TrEMBL
PROSITE ZF_FYVE UniProtKB/TrEMBL
SMART FYVE UniProtKB/TrEMBL
Superfamily-SCOP SSF57903 UniProtKB/TrEMBL
UniProt A0A2R9BRJ6 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9C0M3 ENTREZGENE, UniProtKB/TrEMBL