GTF2A2 (general transcription factor IIA subunit 2) - Rat Genome Database

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Gene: GTF2A2 (general transcription factor IIA subunit 2) Pan paniscus
Analyze
Symbol: GTF2A2
Name: general transcription factor IIA subunit 2
RGD ID: 11874733
Description: ENCODES a protein that exhibits RNA polymerase II-specific DNA-binding transcription factor binding (ortholog); transcription factor binding (ortholog); INVOLVED IN positive regulation of transcription by RNA polymerase II (ortholog); PARTICIPATES IN RNA polymerase II transcription initiation pathway; ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); genetic disease (ortholog); FOUND IN transcription factor TFIIA complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: transcription initiation factor IIA subunit 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21648,902,349 - 48,922,048 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11553,085,842 - 53,104,641 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01538,608,360 - 38,627,156 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11556,913,452 - 56,932,051 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1556,913,452 - 56,932,052 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
GTF2A2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21648,902,349 - 48,922,048 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11553,085,842 - 53,104,641 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01538,608,360 - 38,627,156 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11556,913,452 - 56,932,051 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1556,913,452 - 56,932,052 (-)Ensemblpanpan1.1panPan2
GTF2A2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381559,638,062 - 59,657,515 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1559,638,062 - 59,657,541 (-)EnsemblGRCh38hg38GRCh38
GRCh371559,930,261 - 59,949,714 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361557,718,358 - 57,736,987 (-)NCBINCBI36Build 36hg18NCBI36
Build 341557,718,357 - 57,736,985NCBI
Celera1536,818,236 - 36,837,689 (-)NCBICelera
Cytogenetic Map15q22.2NCBI
HuRef1536,752,262 - 36,771,682 (-)NCBIHuRef
CHM1_11560,048,219 - 60,067,695 (-)NCBICHM1_1
T2T-CHM13v2.01557,439,769 - 57,459,225 (-)NCBIT2T-CHM13v2.0
Gtf2a2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39969,919,830 - 69,930,148 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl969,919,832 - 69,930,148 (+)EnsemblGRCm39 Ensembl
GRCm38970,012,548 - 70,022,866 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl970,012,550 - 70,022,866 (+)EnsemblGRCm38mm10GRCm38
MGSCv37969,860,357 - 69,870,654 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36969,811,714 - 69,822,011 (+)NCBIMGSCv36mm8
Celera967,229,001 - 67,239,301 (+)NCBICelera
Cytogenetic Map9DNCBI
cM Map939.18NCBI
Gtf2a2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8879,542,682 - 79,556,484 (+)NCBIGRCr8
mRatBN7.2870,662,447 - 70,675,576 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl870,662,428 - 70,675,569 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1067,628,292 - 67,628,621 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01067,133,660 - 67,133,989 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0872,311,551 - 72,320,417 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0876,422,341 - 76,435,587 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl876,422,359 - 76,435,473 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0876,640,681 - 76,653,942 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4874,447,866 - 74,456,735 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1874,466,919 - 74,475,789 (+)NCBI
Celera871,051,449 - 71,060,316 (-)NCBICelera
Cytogenetic Map8q24NCBI
Gtf2a2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495545015,181,824 - 15,195,594 (+)NCBIChiLan1.0ChiLan1.0
GTF2A2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13024,502,825 - 24,522,248 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3024,484,701 - 24,522,207 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3024,476,918 - 24,496,309 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03024,671,512 - 24,691,163 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3024,671,512 - 24,691,398 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13024,597,440 - 24,616,848 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03024,679,848 - 24,699,256 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03024,867,205 - 24,886,587 (-)NCBIUU_Cfam_GSD_1.0
Gtf2a2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640102,788,934 - 102,803,926 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647120,636,202 - 20,652,013 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647120,636,997 - 20,651,986 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GTF2A2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1112,390,594 - 112,402,265 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11112,371,276 - 112,399,541 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21124,288,264 - 124,316,522 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GTF2A2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12623,850,483 - 23,868,477 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666048117,459,828 - 117,477,971 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gtf2a2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478112,498,702 - 12,512,810 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478112,498,057 - 12,510,701 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000051233   ⟹   ENSPPAP00000028386
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1556,913,452 - 56,932,052 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000051245   ⟹   ENSPPAP00000028398
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1556,913,721 - 56,926,795 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000051251   ⟹   ENSPPAP00000028404
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1556,913,725 - 56,926,795 (-)Ensembl
RefSeq Acc Id: XM_003827914   ⟹   XP_003827962
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21648,902,349 - 48,922,048 (-)NCBI
NHGRI_mPanPan11553,085,842 - 53,104,641 (-)NCBI
Mhudiblu_PPA_v01538,608,360 - 38,627,156 (-)NCBI
PanPan1.11556,913,452 - 56,932,051 (-)NCBI
Sequence:
RefSeq Acc Id: XR_010109928
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21648,902,349 - 48,922,048 (-)NCBI
Protein Sequences
Protein RefSeqs XP_003827962 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000028386.1
  ENSPPAP00000028398.1
  ENSPPAP00000028404.1
Reference Protein Sequences
RefSeq Acc Id: XP_003827962   ⟸   XM_003827914
- UniProtKB: A0A2R9BP38 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSPPAP00000028386   ⟸   ENSPPAT00000051233
RefSeq Acc Id: ENSPPAP00000028398   ⟸   ENSPPAT00000051245
RefSeq Acc Id: ENSPPAP00000028404   ⟸   ENSPPAT00000051251
Protein Domains
Transcription initiation factor IIA gamma subunit C-   Transcription initiation factor IIA gamma subunit N-


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000037230 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000051233.1 UniProtKB/TrEMBL
  ENSPPAT00000051245.1 UniProtKB/TrEMBL
  ENSPPAT00000051251.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.287.190 UniProtKB/TrEMBL
  2.30.18.10 UniProtKB/TrEMBL
InterPro TFIIA_a-hlx UniProtKB/TrEMBL
  TFIIA_b-brl UniProtKB/TrEMBL
  TFIIA_gsu UniProtKB/TrEMBL
  TFIIA_gsu_C UniProtKB/TrEMBL
  TFIIA_gsu_N UniProtKB/TrEMBL
KEGG Report pps:100986293 UniProtKB/TrEMBL
NCBI Gene GTF2A2 ENTREZGENE
PANTHER PTHR10966 UniProtKB/TrEMBL
  TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 2 UniProtKB/TrEMBL
Pfam TFIIA_gamma_C UniProtKB/TrEMBL
  TFIIA_gamma_N UniProtKB/TrEMBL
PIRSF Hum_TFIIA_gamma UniProtKB/TrEMBL
Superfamily-SCOP SSF50784 UniProtKB/TrEMBL
  Transcription factor IIA (TFIIA), alpha-helical domain UniProtKB/TrEMBL
UniProt A0A2R9BFH3_PANPA UniProtKB/TrEMBL
  A0A2R9BGI7_PANPA UniProtKB/TrEMBL
  A0A2R9BP38 ENTREZGENE, UniProtKB/TrEMBL