TEDC2 (tubulin epsilon and delta complex 2) - Rat Genome Database

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Gene: TEDC2 (tubulin epsilon and delta complex 2) Pan paniscus
Analyze
Symbol: TEDC2
Name: tubulin epsilon and delta complex 2
RGD ID: 11874456
Description: INVOLVED IN positive regulation of smoothened signaling pathway (inferred); ASSOCIATED WITH developmental and epileptic encephalopathy 1 (ortholog); epilepsy (ortholog); hepatocellular carcinoma (ortholog); FOUND IN centriole (inferred); cilium (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: C16H16orf59; chromosome 16 open reading frame, human C16orf59; tubulin epsilon and delta complex protein 2; uncharacterized protein C16orf59 homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2182,961,311 - 2,966,189 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1166,742,330 - 6,747,198 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0161,316,181 - 1,321,075 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1162,559,493 - 2,564,370 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl162,559,493 - 2,564,370 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
centriole  (IEA)
cilium  (IEA)

Molecular Function

References

Genomics

Comparative Map Data
TEDC2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2182,961,311 - 2,966,189 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1166,742,330 - 6,747,198 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0161,316,181 - 1,321,075 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1162,559,493 - 2,564,370 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl162,559,493 - 2,564,370 (+)Ensemblpanpan1.1panPan2
TEDC2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38162,460,109 - 2,464,963 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl162,460,086 - 2,464,963 (+)EnsemblGRCh38hg38GRCh38
GRCh37162,510,110 - 2,514,964 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36162,450,116 - 2,454,965 (+)NCBINCBI36Build 36hg18NCBI36
Celera162,724,490 - 2,729,339 (+)NCBICelera
Cytogenetic Map16p13.3NCBI
HuRef162,435,738 - 2,440,587 (+)NCBIHuRef
CHM1_1162,510,009 - 2,514,858 (+)NCBICHM1_1
T2T-CHM13v2.0162,482,238 - 2,487,092 (+)NCBIT2T-CHM13v2.0
Tedc2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391724,434,028 - 24,439,825 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1724,434,028 - 24,439,825 (-)EnsemblGRCm39 Ensembl
GRCm381724,215,054 - 24,220,934 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1724,215,054 - 24,220,851 (-)EnsemblGRCm38mm10GRCm38
MGSCv371724,351,999 - 24,357,714 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361723,942,654 - 23,948,369 (-)NCBIMGSCv36mm8
Celera1724,720,495 - 24,726,198 (-)NCBICelera
Cytogenetic Map17A3.3NCBI
cM Map1712.32NCBI
Tedc2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81013,750,586 - 13,755,775 (-)NCBIGRCr8
mRatBN7.21013,246,032 - 13,251,196 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1013,246,037 - 13,251,124 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1017,990,957 - 17,996,048 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01017,479,796 - 17,484,887 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01012,978,519 - 12,983,612 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01013,586,852 - 13,591,938 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1013,586,648 - 13,591,953 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01013,402,883 - 13,407,969 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41013,466,825 - 13,471,910 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1012,931,940 - 12,937,026 (-)NCBICelera
Cytogenetic Map10q12NCBI
Tedc2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544214,856,269 - 14,862,338 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544214,856,517 - 14,862,391 (-)NCBIChiLan1.0ChiLan1.0
TEDC2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1638,567,365 - 38,571,451 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl638,567,547 - 38,571,341 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha639,805,559 - 39,809,622 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0638,876,432 - 38,880,495 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl638,875,289 - 38,880,446 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1638,561,556 - 38,565,618 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0638,534,190 - 38,538,253 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0639,010,339 - 39,014,403 (-)NCBIUU_Cfam_GSD_1.0
Tedc2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344105,113,543 - 105,118,054 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366941,590,919 - 1,595,719 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366941,591,392 - 1,595,693 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TEDC2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl339,580,199 - 39,584,380 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1339,580,181 - 39,584,414 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2342,635,334 - 42,639,548 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TEDC2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.152,338,246 - 2,343,171 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl52,338,341 - 2,342,825 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606828,694,362 - 28,699,320 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tedc2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624824209,879 - 218,659 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624824209,758 - 215,362 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000041361   ⟹   ENSPPAP00000018628
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl162,559,493 - 2,564,370 (+)Ensembl
RefSeq Acc Id: XM_003806211   ⟹   XP_003806259
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2182,961,311 - 2,966,189 (+)NCBI
NHGRI_mPanPan1166,742,330 - 6,747,198 (+)NCBI
Mhudiblu_PPA_v0161,316,181 - 1,321,075 (+)NCBI
PanPan1.1162,559,493 - 2,564,370 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008951199   ⟹   XP_008949447
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2182,961,311 - 2,966,189 (+)NCBI
NHGRI_mPanPan1166,742,336 - 6,747,198 (+)NCBI
Mhudiblu_PPA_v0161,316,202 - 1,321,075 (+)NCBI
PanPan1.1162,559,493 - 2,564,370 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008951206   ⟹   XP_008949454
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2182,961,584 - 2,966,189 (+)NCBI
NHGRI_mPanPan1166,742,593 - 6,747,198 (+)NCBI
Mhudiblu_PPA_v0161,316,475 - 1,321,075 (+)NCBI
PanPan1.1162,559,800 - 2,564,370 (+)NCBI
Sequence:
RefSeq Acc Id: XM_034940989   ⟹   XP_034796880
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2182,961,607 - 2,966,189 (+)NCBI
NHGRI_mPanPan1166,742,616 - 6,747,198 (+)NCBI
Mhudiblu_PPA_v0161,316,497 - 1,321,075 (+)NCBI
Protein Sequences
Protein RefSeqs XP_003806259 (Get FASTA)   NCBI Sequence Viewer  
  XP_008949447 (Get FASTA)   NCBI Sequence Viewer  
  XP_008949454 (Get FASTA)   NCBI Sequence Viewer  
  XP_034796880 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000018628.1
Reference Protein Sequences
RefSeq Acc Id: XP_003806259   ⟸   XM_003806211
- Peptide Label: isoform X1
- UniProtKB: A0A2R9ANA1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008949447   ⟸   XM_008951199
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_008949454   ⟸   XM_008951206
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_034796880   ⟸   XM_034940989
- Peptide Label: isoform X4
RefSeq Acc Id: ENSPPAP00000018628   ⟸   ENSPPAT00000041361


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000032450 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000041361.1 UniProtKB/TrEMBL
InterPro DUF4693 UniProtKB/TrEMBL
KEGG Report pps:100974248 UniProtKB/TrEMBL
NCBI Gene C16H16orf59 ENTREZGENE
PANTHER PTHR14870 UniProtKB/TrEMBL
  TUBULIN EPSILON AND DELTA COMPLEX PROTEIN 2 UniProtKB/TrEMBL
Pfam DUF4693 UniProtKB/TrEMBL
UniProt A0A2R9ANA1 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-07-18 TEDC2  tubulin epsilon and delta complex 2  C16H16orf59  chromosome 16 open reading frame, human C16orf59  Symbol and/or name change 5135510 APPROVED