LOC100984057 (olfactory receptor 11H4) - Rat Genome Database

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Pathways
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Gene: LOC100984057 (olfactory receptor 11H4) Pan paniscus
Analyze
Symbol: LOC100984057 (Ensembl: OR11H4)
Name: olfactory receptor 11H4 (Ensembl:olfactory receptor family 11 subfamily H member 4)
RGD ID: 11873811
Description: ENCODES a protein that exhibits G protein-coupled receptor activity (inferred); olfactory receptor activity (inferred); INVOLVED IN detection of chemical stimulus involved in sensory perception of smell (inferred); G protein-coupled receptor signaling pathway (inferred); sensory perception of smell (inferred); ASSOCIATED WITH genetic disease (ortholog); FOUND IN membrane (inferred); plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21521,747,783 - 21,753,473 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11420,964,271 - 20,969,961 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0141,116,278 - 1,117,347 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11419,169,702 - 19,170,771 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1419,169,749 - 19,170,723 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
LOC100984057
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21521,747,783 - 21,753,473 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11420,964,271 - 20,969,961 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0141,116,278 - 1,117,347 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11419,169,702 - 19,170,771 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1419,169,749 - 19,170,723 (+)Ensemblpanpan1.1panPan2
OR11H4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381420,239,286 - 20,244,349 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1420,239,286 - 20,244,349 (+)EnsemblGRCh38hg38GRCh38
GRCh371420,707,445 - 20,712,508 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361419,780,791 - 19,781,765 (+)NCBINCBI36Build 36hg18NCBI36
Build 341419,780,790 - 19,781,765NCBI
Celera14572,152 - 573,126 (+)NCBICelera
Cytogenetic Map14q11.2NCBI
HuRef14833,103 - 834,077 (+)NCBIHuRef
CHM1_11420,711,917 - 20,712,891 (+)NCBICHM1_1
T2T-CHM13v2.01414,436,092 - 14,441,147 (+)NCBIT2T-CHM13v2.0
Or11h4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391450,973,676 - 50,981,781 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1450,973,628 - 50,982,551 (-)EnsemblGRCm39 Ensembl
GRCm381450,736,219 - 50,744,324 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1450,736,171 - 50,745,094 (-)EnsemblGRCm38mm10GRCm38
MGSCv371451,355,894 - 51,363,999 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361449,658,170 - 49,659,145 (-)NCBIMGSCv36mm8
Celera1447,023,937 - 47,032,012 (-)NCBICelera
Cytogenetic Map14C1NCBI
cM Map1426.22NCBI
Or11h4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81526,420,560 - 26,421,546 (-)NCBIGRCr8
mRatBN7.21523,946,991 - 23,947,977 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1523,946,943 - 23,953,404 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1526,718,211 - 26,719,197 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01527,683,366 - 27,684,352 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01525,926,744 - 25,927,730 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01527,548,762 - 27,549,748 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1527,548,762 - 27,549,748 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01531,484,022 - 31,485,008 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41526,697,871 - 26,698,857 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11526,713,570 - 26,714,557 (-)NCBI
Celera1524,273,617 - 24,274,603 (-)NCBICelera
Cytogenetic Map15p14NCBI
LOC102019331
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555501,024,459 - 1,025,403 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555501,024,441 - 1,025,403 (+)NCBIChiLan1.0ChiLan1.0
LOC482553
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11517,624,441 - 17,625,150 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1518,108,896 - 18,109,849 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01517,882,194 - 17,883,147 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1517,882,170 - 17,883,147 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11517,565,667 - 17,566,620 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01517,619,555 - 17,620,508 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01517,748,953 - 17,749,906 (+)NCBIUU_Cfam_GSD_1.0
LOC101959982
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864077,486,127 - 77,491,114 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936877471,085 - 472,029 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936877467,284 - 472,071 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LOC100156306
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl778,624,867 - 78,625,811 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1778,624,867 - 78,625,835 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2783,653,291 - 83,662,602 (-)NCBISscrofa10.2Sscrofa10.2susScr3


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_057299777 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSPPAT00000042318   ⟹   ENSPPAP00000019550
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1419,169,749 - 19,170,723 (+)Ensembl
RefSeq Acc Id: XM_057299777   ⟹   XP_057155760
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21521,747,783 - 21,753,473 (+)NCBI
NHGRI_mPanPan11420,964,271 - 20,969,961 (+)NCBI
Protein Sequences
Protein RefSeqs XP_057155760 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000019550.1
Reference Protein Sequences
RefSeq Acc Id: ENSPPAP00000019550   ⟸   ENSPPAT00000042318
RefSeq Acc Id: XP_057155760   ⟸   XM_057299777
- UniProtKB: A0A2R9AUU6 (UniProtKB/TrEMBL)
Protein Domains
G-protein coupled receptors family 1 profile


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000032987 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000042318.1 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_7TM UniProtKB/TrEMBL
  Olfact_rcpt UniProtKB/TrEMBL
KEGG Report pps:100984057 UniProtKB/TrEMBL
NCBI Gene LOC100984057 ENTREZGENE
PANTHER G-PROTEIN COUPLED RECEPTOR UniProtKB/TrEMBL
  OLFACTORY RECEPTOR 11H4 UniProtKB/TrEMBL
Pfam 7tm_4 UniProtKB/TrEMBL
PRINTS GPCRRHODOPSN UniProtKB/TrEMBL
  OLFACTORYR UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt A0A2R9AUU6 ENTREZGENE, UniProtKB/TrEMBL