HTATSF1 (HIV-1 Tat specific factor 1)

Gene: HTATSF1 (HIV-1 Tat specific factor 1) Pan paniscus

Analyze

Symbol:

HTATSF1

Name:

HIV-1 Tat specific factor 1

RGD ID:

11871483

Description:

ENCODES a protein that exhibits chromatin-protein adaptor activity (inferred); poly-ADP-D-ribose modification-dependent protein binding (inferred); RNA binding (inferred); INVOLVED IN chromatin organization (inferred); double-strand break repair via homologous recombination (inferred); mRNA processing (inferred); ASSOCIATED WITH autistic disorder (ortholog); Christianson syndrome (ortholog); Chromosome Xq26.3 Duplication Syndrome (ortholog); FOUND IN site of double-strand break (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

17S U2 SnRNP complex component HTATSF1; HIV Tat-specific factor 1

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	X	135,916,021 - 135,931,150 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	X	135,919,631 - 135,935,326 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	X	125,626,714 - 125,641,988 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	X	135,892,697 - 135,907,973 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	X	135,892,697 - 135,910,919 (+)	Ensembl	panpan1.1		panPan2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autistic disorder (ISO)

Christianson syndrome (ISO)

Chromosome Xq26.3 Duplication Syndrome (ISO)

Congenital Heart Defects, Multiple Types, 1, X-Linked (ISO)

genetic disease (ISO)

syndromic X-linked intellectual disability Lubs type (ISO)

X-linked hyper IgM syndrome (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

chromatin organization (IEA)

double-strand break repair via homologous recombination (IEA)

mRNA processing (IEA)

mRNA splicing, via spliceosome (IEA)

protein localization to site of double-strand break (IEA)

RNA splicing (IEA)

U2-type prespliceosome assembly (IEA)

Cellular Component

nucleoplasm (IEA)

site of double-strand break (IEA,ISO)

U2 snRNP (IEA)

U2-type spliceosomal complex (IEA)

Molecular Function

chromatin-protein adaptor activity (IEA)

poly-ADP-D-ribose modification-dependent protein binding (IEA)

protein binding (ISO)

RNA binding (IEA)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

HTATSF1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	X	135,916,021 - 135,931,150 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	X	135,919,631 - 135,935,326 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	X	125,626,714 - 125,641,988 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	X	135,892,697 - 135,907,973 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	X	135,892,697 - 135,910,919 (+)	Ensembl	panpan1.1		panPan2

HTATSF1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	X	136,497,229 - 136,512,346 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	X	136,497,079 - 136,512,346 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	X	135,579,388 - 135,594,505 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	X	135,407,337 - 135,422,156 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	X	135,305,190 - 135,320,009	NCBI
Celera	X	135,942,878 - 135,958,146 (+)	NCBI		Celera
Cytogenetic Map	X	q26.3	NCBI
HuRef	X	124,849,852 - 124,864,864 (+)	NCBI		HuRef
CHM1_1	X	135,490,891 - 135,506,159 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	X	134,805,972 - 134,821,090 (+)	NCBI		T2T-CHM13v2.0

Htatsf1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	X	56,098,930 - 56,112,543 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	X	56,098,943 - 56,112,543 (+)	Ensembl		GRCm39 Ensembl
GRCm38	X	57,053,570 - 57,067,183 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	X	57,053,583 - 57,067,183 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	X	54,306,792 - 54,320,360 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	X	53,400,399 - 53,413,967 (+)	NCBI		MGSCv36	mm8
Celera	X	43,532,707 - 43,546,274 (+)	NCBI		Celera
Cytogenetic Map	X	A6	NCBI
cM Map	X	30.81	NCBI

Htatsf1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	139,972,742 - 139,986,923 (+)	NCBI		GRCr8
mRatBN7.2	X	134,935,426 - 134,949,607 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	134,935,426 - 134,949,607 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	X	137,132,273 - 137,146,454 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	140,686,894 - 140,701,075 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	138,256,290 - 138,270,471 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	159,514,053 - 159,528,281 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	159,513,800 - 159,528,281 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	X	154,143,843 - 154,158,071 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	X	141,697,471 - 141,711,652 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	X	142,977,478 - 142,991,659 (+)	NCBI		Celera
Cytogenetic Map	X	q36	NCBI

Htatsf1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955489	8,607,629 - 8,622,044 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955489	8,607,649 - 8,622,044 (-)	NCBI	ChiLan1.0	ChiLan1.0

HTATSF1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	X	106,848,455 - 106,866,540 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	X	106,848,455 - 106,866,540 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	X	92,669,016 - 92,687,102 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	X	108,828,113 - 108,846,207 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	X	108,828,113 - 108,846,207 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	X	105,969,034 - 105,987,121 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	X	108,160,849 - 108,178,931 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	X	107,801,300 - 107,819,381 (+)	NCBI		UU_Cfam_GSD_1.0

Htatsf1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	X	104,834,944 - 104,852,206 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936513	10,762,398 - 10,779,374 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936513	10,762,417 - 10,779,641 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

HTATSF1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	X	111,624,631 - 111,643,323 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	X	111,624,303 - 111,643,566 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	X	127,482,214 - 127,501,131 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

HTATSF1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	X	111,498,102 - 111,513,959 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	X	111,498,634 - 111,514,749 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666065	49,181,955 - 49,197,531 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Htatsf1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624808	10,634,597 - 10,648,892 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624808	10,634,919 - 10,648,734 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003812324	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008964717	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008964718	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JARIFH020000024	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSPPAT00000026741 ⟹ ENSPPAP00000006059

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	X	135,892,697 - 135,910,919 (+)	Ensembl

RefSeq Acc Id:

XM_003812324 ⟹ XP_003812372

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	X	135,916,287 - 135,931,150 (+)	NCBI
NHGRI_mPanPan1	X	135,919,902 - 135,935,326 (+)	NCBI
Mhudiblu_PPA_v0	X	125,627,149 - 125,641,988 (+)	NCBI
PanPan1.1	X	135,893,114 - 135,907,973 (+)	NCBI

Sequence:

show sequence

AGAGAGGGGGGCGGTGCAGCAGCCGAGCGGCCGCGATTTCCCGGGGACTGCTGGNNNNNNNNNN
NNNNNNNNNNGGCGGGCCGGGGGGCGGCGGGGCGCGAGCAGAGCGCGGTCGACCTCCCTTTCTC
TGCTCAGCTCCAGCGTCATTTCGGCCTCTTAGTTCTTCTGAACCCTGCTCCTGAGCTAGGTAGG
AAACATGAGCGGCACCAACTTGGATGGGAACGATGAGTTTGATGAGCAGTTGCGAATGCAAGAA
TTGTACGGAGACGGCAAGGATGGTGACACCCAGACCGATGCCGGCGGAGAACCCGATTCTCTCG
GGCAGCAGCCGACGGACACTCCCTACGAGTGGGACCTGGACAAAAAGGCTTGGTTCCCCAAGAT
TACTGAAGATTTCATTGCTACATATCAGGCCAATTATGGCTTCTCTAACGATGGCGCATCTAGT
TCTACCGCAAATGTTGAAGATGTCCATGCTAGGACTGCAGAGGAACCTCCACAAGAAAAAGCCC
CGGAACCCACTGATGCCAGAAAGAAGGGAGAAAAAAGAAAGGCTGAGTCAGGATGGTTTCATGT
TGAAGAAGACAGAAATACAAATGTATACGTGTCTGGTTTGCCTCCAGATATTACAGTGGATGAA
TTTATACAACTTATGTCCAAGTTTGGCATTATTATGAGAGATCCTCAGACAGAAGAATTTAAGG
TCAAACTTTACAAAGATAATCAAGGAAATCTTAAAGGAGATGGTCTTTGCTGTTATTTGAAAAG
AGAATCTGTGGAACTTGCATTAAAACTTTTGGATGAAGATGAAATTAGAGGCTACAAATTACAT
GTTGAGGTGGCAAAGTTTCAACTGAAGGGAGAATATGATGCCTCAAAGAAGAAGAAGAAGTGCA
AAGACTATAAGAAGAAGCTGTCTATGCAACAAAAGCAGTTGGATTGGAGACCTGAGAGGCGAGC
CGGACCATCCCGGATGCGCCATGAGCGAGTTGTCATCATCAAGAATATGTTTCATCCTATGGAT
TTTGAGGATGATCCGTTGGTGCTGAATGAGATCAGAGAAGACCTTCGAGTAGAGTGTTCGAAGT
TTGGACAAATTAGGAAACTCCTTCTCTTTGATAGGCACCCAGATGGTGTGGCCTCTGTGTCCTT
TCGGGATCCAGAGGAAGCTGATTATTGTATTCAGACTCTCGATGGAAGATGGTTTGGTGGCCGT
CAAATCACTGCCCAGGCATGGGATGGGACTACAGATTATCAGGTGGAGGAAACCTCAAGAGAAA
GGGAGGAAAGGCTGAGAGGATGGGAGGCTTTCCTCAATGCTCCTGAGGCCAACAGAGGCCTTAG
GCGTTCAGATTCTGTCTCTGCTTCCGAAAGGGCAGGGCCTTCTAGAGCAAGGCATTTTTCAGAG
CACCCCAGCACATCTAAAATGAATGCTCAAGAAACTGCAACTGGAATGGCATTTGAAGAACCTA
TAGATGAGAAGAAGTTTGAAAAGACAGAAGATGGGGGAGAATTTGAAGAAGGTGCTTCTGAAAA
CAATGCTAAGGAAAGTAGCCCCGAAAAAGAGGCTGAAGAAGGCTGCCCTGAAAAAGAATCTGAA
GAGGGCTGCCCCAAAAGAGGGTTTGAAGGCAGCTGCTCCCAAAAAGAGTCTGAAGAAGGCAATC
CCGTAAGAGGATCTGAAGAGGGTAGTCCTAAAAAAGAGTCTAAAAAGAAGACACTCAAAAATGA
TTGTGAAGAGAATGGCCTTGCAAAGGAATCTGAAGATGACCTCAACAAGGAGTCTGAAGAGGAG
GTTGGCCCCACAAAAGAGTCCGAAGAAGATGACTCAGAGAAAGAGTCTGACGAAGACTGCTCTG
AAAAACAGTCTGAAGATGGCTCCGAAAGAGAATTTGAAGAAAATGGTCTCGAGAAAGATTTGGA
CGAGGAAGGTTCTGAAAAGGAGCTTCATGAAAATGTTCTTGACAAAGAGTTAGAAGAAAATGAC
TCTGAAAACTCCGAATTTGAAGATGACGGCTCTGAAAAAGTGTTAGATGAGGAAGGCTCTGAGA
GAGAGTTTGACGAAGATTCAGATGAAAAGGAAGAAGAGGAGGATACATATGAAAAAGTATTTGA
TGATGAGTCTGATGAGAAAGAGGATGAAGAATATGCAGATGAAAAGGGGCTTGAAGCTGCTGAT
AAAAAGGCGGAAGAAGGTGATGCAGATGAAAAGCTGTTTGAAGAGTCAGACGACAAGGAAGATG
AAGATGCAGATGGAAAGGAAGTTGAAGATGCTGACGAAAAGTTGTTTGAAGATGATGATTCCAA
TGAGAAGTTGTTTGATGAGGAGGAAGATTCCAGTGAGAAGTTGTTTGATGATTCTGATGAGAGG
GGGACTTTGGGTGGTTTTGGGAGTGTTGAAGAAGGGCCCCTATCCACTGGCAGCAGCTTTATTC
TCAGTAGCGATGATGATGACGATGATATTTAATCCCTTAAACTTGCTTTTTAGGGAGAGTCCTC
CATCTACATTTGCCTGTGCTTCAGGGTAATTACTAGTAGTGTTACATGAACATGTGCATAGTGG
TAGGATGCCATCAGATTAAAGCATTGAAGTGTTTCATTGTTACCTGTACCTAATGGTTTTAAAT
ATATGTTAATTGATTGTTTAGTTAAAATGTCATAGTTACAATGCAAGTAAACTGGATACTTGTT
CTTTTGTCAGATTTGTTAAATGCATGCAGAATAATATTTTTAAAAGTATTGATTGAAGTTTGTG
ATATTCATCAATAAAAATGAGTTGATAATATGCAGAAACTGAAAA

hide sequence

RefSeq Acc Id:

XM_008964717 ⟹ XP_008962965

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	X	135,916,021 - 135,931,150 (+)	NCBI
NHGRI_mPanPan1	X	135,919,631 - 135,935,326 (+)	NCBI
Mhudiblu_PPA_v0	X	125,626,714 - 125,641,988 (+)	NCBI
PanPan1.1	X	135,892,697 - 135,907,973 (+)	NCBI

Sequence:

show sequence

AGTGGCCCTCGCCCCGCCCCAAACCCGACCCCGGTGTGCGTTGACGCGCAGCAGCAGCGCGTCC
CTCCAACCCCGGCGCCCCGCCTCCCCGGGCCTCGCTCCGCGTGCCGGCGTCGGCGCTTTTTGAC
GCCATGGTGGGCGTGTCGGCGCGACCCGCGACGTCGCCACGCGCCGACAATGGTGGCTGCGTCG
GCCTGAGCAGGGCTTAGTTTACAAGTAATTTCCTGACGTTGCCGAGGGAGCCGCAGTCGCCTCA
GATCCGGTCGGCGGCGGCGGCGGTGGCGGCGGCGGCAGCGCGCCTGCGCGCTCCCGCAGCGCCC
TGGACCTAGCAGCGGTGCCGAGGCCCGGCGGAGCAAGCCAGCTCCAGCGTCATTTCGGCCTCTT
AGTTCTTCTGAACCCTGCTCCTGAGCTAGGTAGGAAACATGAGCGGCACCAACTTGGATGGGAA
CGATGAGTTTGATGAGCAGTTGCGAATGCAAGAATTGTACGGAGACGGCAAGGATGGTGACACC
CAGACCGATGCCGGCGGAGAACCCGATTCTCTCGGGCAGCAGCCGACGGACACTCCCTACGAGT
GGGACCTGGACAAAAAGGCTTGGTTCCCCAAGATTACTGAAGATTTCATTGCTACATATCAGGC
CAATTATGGCTTCTCTAACGATGGCGCATCTAGTTCTACCGCAAATGTTGAAGATGTCCATGCT
AGGACTGCAGAGGAACCTCCACAAGAAAAAGCCCCGGAACCCACTGATGCCAGAAAGAAGGGAG
AAAAAAGAAAGGCTGAGTCAGGATGGTTTCATGTTGAAGAAGACAGAAATACAAATGTATACGT
GTCTGGTTTGCCTCCAGATATTACAGTGGATGAATTTATACAACTTATGTCCAAGTTTGGCATT
ATTATGAGAGATCCTCAGACAGAAGAATTTAAGGTCAAACTTTACAAAGATAATCAAGGAAATC
TTAAAGGAGATGGTCTTTGCTGTTATTTGAAAAGAGAATCTGTGGAACTTGCATTAAAACTTTT
GGATGAAGATGAAATTAGAGGCTACAAATTACATGTTGAGGTGGCAAAGTTTCAACTGAAGGGA
GAATATGATGCCTCAAAGAAGAAGAAGAAGTGCAAAGACTATAAGAAGAAGCTGTCTATGCAAC
AAAAGCAGTTGGATTGGAGACCTGAGAGGCGAGCCGGACCATCCCGGATGCGCCATGAGCGAGT
TGTCATCATCAAGAATATGTTTCATCCTATGGATTTTGAGGATGATCCGTTGGTGCTGAATGAG
ATCAGAGAAGACCTTCGAGTAGAGTGTTCGAAGTTTGGACAAATTAGGAAACTCCTTCTCTTTG
ATAGGCACCCAGATGGTGTGGCCTCTGTGTCCTTTCGGGATCCAGAGGAAGCTGATTATTGTAT
TCAGACTCTCGATGGAAGATGGTTTGGTGGCCGTCAAATCACTGCCCAGGCATGGGATGGGACT
ACAGATTATCAGGTGGAGGAAACCTCAAGAGAAAGGGAGGAAAGGCTGAGAGGATGGGAGGCTT
TCCTCAATGCTCCTGAGGCCAACAGAGGCCTTAGGCGTTCAGATTCTGTCTCTGCTTCCGAAAG
GGCAGGGCCTTCTAGAGCAAGGCATTTTTCAGAGCACCCCAGCACATCTAAAATGAATGCTCAA
GAAACTGCAACTGGAATGGCATTTGAAGAACCTATAGATGAGAAGAAGTTTGAAAAGACAGAAG
ATGGGGGAGAATTTGAAGAAGGTGCTTCTGAAAACAATGCTAAGGAAAGTAGCCCCGAAAAAGA
GGCTGAAGAAGGCTGCCCTGAAAAAGAATCTGAAGAGGGCTGCCCCAAAAGAGGGTTTGAAGGC
AGCTGCTCCCAAAAAGAGTCTGAAGAAGGCAATCCCGTAAGAGGATCTGAAGAGGGTAGTCCTA
AAAAAGAGTCTAAAAAGAAGACACTCAAAAATGATTGTGAAGAGAATGGCCTTGCAAAGGAATC
TGAAGATGACCTCAACAAGGAGTCTGAAGAGGAGGTTGGCCCCACAAAAGAGTCCGAAGAAGAT
GACTCAGAGAAAGAGTCTGACGAAGACTGCTCTGAAAAACAGTCTGAAGATGGCTCCGAAAGAG
AATTTGAAGAAAATGGTCTCGAGAAAGATTTGGACGAGGAAGGTTCTGAAAAGGAGCTTCATGA
AAATGTTCTTGACAAAGAGTTAGAAGAAAATGACTCTGAAAACTCCGAATTTGAAGATGACGGC
TCTGAAAAAGTGTTAGATGAGGAAGGCTCTGAGAGAGAGTTTGACGAAGATTCAGATGAAAAGG
AAGAAGAGGAGGATACATATGAAAAAGTATTTGATGATGAGTCTGATGAGAAAGAGGATGAAGA
ATATGCAGATGAAAAGGGGCTTGAAGCTGCTGATAAAAAGGCGGAAGAAGGTGATGCAGATGAA
AAGCTGTTTGAAGAGTCAGACGACAAGGAAGATGAAGATGCAGATGGAAAGGAAGTTGAAGATG
CTGACGAAAAGTTGTTTGAAGATGATGATTCCAATGAGAAGTTGTTTGATGAGGAGGAAGATTC
CAGTGAGAAGTTGTTTGATGATTCTGATGAGAGGGGGACTTTGGGTGGTTTTGGGAGTGTTGAA
GAAGGGCCCCTATCCACTGGCAGCAGCTTTATTCTCAGTAGCGATGATGATGACGATGATATTT
AATCCCTTAAACTTGCTTTTTAGGGAGAGTCCTCCATCTACATTTGCCTGTGCTTCAGGGTAAT
TACTAGTAGTGTTACATGAACATGTGCATAGTGGTAGGATGCCATCAGATTAAAGCATTGAAGT
GTTTCATTGTTACCTGTACCTAATGGTTTTAAATATATGTTAATTGATTGTTTAGTTAAAATGT
CATAGTTACAATGCAAGTAAACTGGATACTTGTTCTTTTGTCAGATTTGTTAAATGCATGCAGA
ATAATATTTTTAAAAGTATTGATTGAAGTTTGTGATATTCATCAATAAAAATGAGTTGATAATA
TGCAGAAACTGAAAA

hide sequence

RefSeq Acc Id:

XM_008964718 ⟹ XP_008962966

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	X	135,916,021 - 135,931,150 (+)	NCBI
NHGRI_mPanPan1	X	135,919,631 - 135,935,326 (+)	NCBI
Mhudiblu_PPA_v0	X	125,626,870 - 125,641,988 (+)	NCBI
PanPan1.1	X	135,892,850 - 135,907,640 (+)	NCBI

Sequence:

show sequence

CCGCGACGTCGCCACGCGCCGACAATGGTGGCTGCGTCGGCCTGAGCAGGGCTTAGTTTACAAG
TAATTTCCTGACGTTGCCGAGGGAGCCGCAGTCGCCTCAGATCCGGTCGGCGGCGGCGGCGGTG
GCGGCGGCGGCAGCGCGCCTGCGCGCTCCCGCAGCGCCCTGGACCTAGCAGCGGTGCCGAGGCC
CGGCGGAGCAAGCCAGGTAGGAAACATGAGCGGCACCAACTTGGATGGGAACGATGAGTTTGAT
GAGCAGTTGCGAATGCAAGAATTGTACGGAGACGGCAAGGATGGTGACACCCAGACCGATGCCG
GCGGAGAACCCGATTCTCTCGGGCAGCAGCCGACGGACACTCCCTACGAGTGGGACCTGGACAA
AAAGGCTTGGTTCCCCAAGATTACTGAAGATTTCATTGCTACATATCAGGCCAATTATGGCTTC
TCTAACGATGGCGCATCTAGTTCTACCGCAAATGTTGAAGATGTCCATGCTAGGACTGCAGAGG
AACCTCCACAAGAAAAAGCCCCGGAACCCACTGATGCCAGAAAGAAGGGAGAAAAAAGAAAGGC
TGAGTCAGGATGGTTTCATGTTGAAGAAGACAGAAATACAAATGTATACGTGTCTGGTTTGCCT
CCAGATATTACAGTGGATGAATTTATACAACTTATGTCCAAGTTTGGCATTATTATGAGAGATC
CTCAGACAGAAGAATTTAAGGTCAAACTTTACAAAGATAATCAAGGAAATCTTAAAGGAGATGG
TCTTTGCTGTTATTTGAAAAGAGAATCTGTGGAACTTGCATTAAAACTTTTGGATGAAGATGAA
ATTAGAGGCTACAAATTACATGTTGAGGTGGCAAAGTTTCAACTGAAGGGAGAATATGATGCCT
CAAAGAAGAAGAAGAAGTGCAAAGACTATAAGAAGAAGCTGTCTATGCAACAAAAGCAGTTGGA
TTGGAGACCTGAGAGGCGAGCCGGACCATCCCGGATGCGCCATGAGCGAGTTGTCATCATCAAG
AATATGTTTCATCCTATGGATTTTGAGGATGATCCGTTGGTGCTGAATGAGATCAGAGAAGACC
TTCGAGTAGAGTGTTCGAAGTTTGGACAAATTAGGAAACTCCTTCTCTTTGATAGGCACCCAGA
TGGTGTGGCCTCTGTGTCCTTTCGGGATCCAGAGGAAGCTGATTATTGTATTCAGACTCTCGAT
GGAAGATGGTTTGGTGGCCGTCAAATCACTGCCCAGGCATGGGATGGGACTACAGATTATCAGG
TGGAGGAAACCTCAAGAGAAAGGGAGGAAAGGCTGAGAGGATGGGAGGCTTTCCTCAATGCTCC
TGAGGCCAACAGAGGCCTTAGGCGTTCAGATTCTGTCTCTGCTTCCGAAAGGGCAGGGCCTTCT
AGAGCAAGGCATTTTTCAGAGCACCCCAGCACATCTAAAATGAATGCTCAAGAAACTGCAACTG
GAATGGCATTTGAAGAACCTATAGATGAGAAGAAGTTTGAAAAGACAGAAGATGGGGGAGAATT
TGAAGAAGGTGCTTCTGAAAACAATGCTAAGGAAAGTAGCCCCGAAAAAGAGGCTGAAGAAGGC
TGCCCTGAAAAAGAATCTGAAGAGGGCTGCCCCAAAAGAGGGTTTGAAGGCAGCTGCTCCCAAA
AAGAGTCTGAAGAAGGCAATCCCGTAAGAGGATCTGAAGAGGGTAGTCCTAAAAAAGAGTCTAA
AAAGAAGACACTCAAAAATGATTGTGAAGAGAATGGCCTTGCAAAGGAATCTGAAGATGACCTC
AACAAGGAGTCTGAAGAGGAGGTTGGCCCCACAAAAGAGTCCGAAGAAGATGACTCAGAGAAAG
AGTCTGACGAAGACTGCTCTGAAAAACAGTCTGAAGATGGCTCCGAAAGAGAATTTGAAGAAAA
TGGTCTCGAGAAAGATTTGGACGAGGAAGGTTCTGAAAAGGAGCTTCATGAAAATGTTCTTGAC
AAAGAGTTAGAAGAAAATGACTCTGAAAACTCCGAATTTGAAGATGACGGCTCTGAAAAAGTGT
TAGATGAGGAAGGCTCTGAGAGAGAGTTTGACGAAGATTCAGATGAAAAGGAAGAAGAGGAGGA
TACATATGAAAAAGTATTTGATGATGAGTCTGATGAGAAAGAGGATGAAGAATATGCAGATGAA
AAGGGGCTTGAAGCTGCTGATAAAAAGGCGGAAGAAGGTGATGCAGATGAAAAGCTGTTTGAAG
AGTCAGACGACAAGGAAGATGAAGATGCAGATGGAAAGGAAGTTGAAGATGCTGACGAAAAGTT
GTTTGAAGATGATGATTCCAATGAGAAGTTGTTTGATGAGGAGGAAGATTCCAGTGAGAAGTTG
TTTGATGATTCTGATGAGAGGGGGACTTTGGGTGGTTTTGGGAGTGTTGAAGAAGGGCCCCTAT
CCACTGGCAGCAGCTTTATTCTCAGTAGCGATGATGATGACGATGATATTTAA

hide sequence

Protein Sequences


Protein RefSeqs	XP_003812372	(Get FASTA)	NCBI Sequence Viewer
	XP_008962965	(Get FASTA)	NCBI Sequence Viewer
	XP_008962966	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSPPAP00000006059
	ENSPPAP00000006059.1

RefSeq Acc Id:

XP_008962965 ⟸ XM_008964717

- UniProtKB:

A0A2R8ZM86 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSGTNLDGNDEFDEQLRMQELYGDGKDGDTQTDAGGEPDSLGQQPTDTPYEWDLDKKAWFPKIT
EDFIATYQANYGFSNDGASSSTANVEDVHARTAEEPPQEKAPEPTDARKKGEKRKAESGWFHVE
EDRNTNVYVSGLPPDITVDEFIQLMSKFGIIMRDPQTEEFKVKLYKDNQGNLKGDGLCCYLKRE
SVELALKLLDEDEIRGYKLHVEVAKFQLKGEYDASKKKKKCKDYKKKLSMQQKQLDWRPERRAG
PSRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFR
DPEEADYCIQTLDGRWFGGRQITAQAWDGTTDYQVEETSREREERLRGWEAFLNAPEANRGLRR
SDSVSASERAGPSRARHFSEHPSTSKMNAQETATGMAFEEPIDEKKFEKTEDGGEFEEGASENN
AKESSPEKEAEEGCPEKESEEGCPKRGFEGSCSQKESEEGNPVRGSEEGSPKKESKKKTLKNDC
EENGLAKESEDDLNKESEEEVGPTKESEEDDSEKESDEDCSEKQSEDGSEREFEENGLEKDLDE
EGSEKELHENVLDKELEENDSENSEFEDDGSEKVLDEEGSEREFDEDSDEKEEEEDTYEKVFDD
ESDEKEDEEYADEKGLEAADKKAEEGDADEKLFEESDDKEDEDADGKEVEDADEKLFEDDDSNE
KLFDEEEDSSEKLFDDSDERGTLGGFGSVEEGPLSTGSSFILSSDDDDDDI

hide sequence

RefSeq Acc Id:

XP_008962966 ⟸ XM_008964718

- UniProtKB:

A0A2R8ZM86 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSGTNLDGNDEFDEQLRMQELYGDGKDGDTQTDAGGEPDSLGQQPTDTPYEWDLDKKAWFPKIT
EDFIATYQANYGFSNDGASSSTANVEDVHARTAEEPPQEKAPEPTDARKKGEKRKAESGWFHVE
EDRNTNVYVSGLPPDITVDEFIQLMSKFGIIMRDPQTEEFKVKLYKDNQGNLKGDGLCCYLKRE
SVELALKLLDEDEIRGYKLHVEVAKFQLKGEYDASKKKKKCKDYKKKLSMQQKQLDWRPERRAG
PSRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFR
DPEEADYCIQTLDGRWFGGRQITAQAWDGTTDYQVEETSREREERLRGWEAFLNAPEANRGLRR
SDSVSASERAGPSRARHFSEHPSTSKMNAQETATGMAFEEPIDEKKFEKTEDGGEFEEGASENN
AKESSPEKEAEEGCPEKESEEGCPKRGFEGSCSQKESEEGNPVRGSEEGSPKKESKKKTLKNDC
EENGLAKESEDDLNKESEEEVGPTKESEEDDSEKESDEDCSEKQSEDGSEREFEENGLEKDLDE
EGSEKELHENVLDKELEENDSENSEFEDDGSEKVLDEEGSEREFDEDSDEKEEEEDTYEKVFDD
ESDEKEDEEYADEKGLEAADKKAEEGDADEKLFEESDDKEDEDADGKEVEDADEKLFEDDDSNE
KLFDEEEDSSEKLFDDSDERGTLGGFGSVEEGPLSTGSSFILSSDDDDDDI

hide sequence

RefSeq Acc Id:

XP_003812372 ⟸ XM_003812324

- UniProtKB:

A0A2R8ZM86 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSGTNLDGNDEFDEQLRMQELYGDGKDGDTQTDAGGEPDSLGQQPTDTPYEWDLDKKAWFPKIT
EDFIATYQANYGFSNDGASSSTANVEDVHARTAEEPPQEKAPEPTDARKKGEKRKAESGWFHVE
EDRNTNVYVSGLPPDITVDEFIQLMSKFGIIMRDPQTEEFKVKLYKDNQGNLKGDGLCCYLKRE
SVELALKLLDEDEIRGYKLHVEVAKFQLKGEYDASKKKKKCKDYKKKLSMQQKQLDWRPERRAG
PSRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFR
DPEEADYCIQTLDGRWFGGRQITAQAWDGTTDYQVEETSREREERLRGWEAFLNAPEANRGLRR
SDSVSASERAGPSRARHFSEHPSTSKMNAQETATGMAFEEPIDEKKFEKTEDGGEFEEGASENN
AKESSPEKEAEEGCPEKESEEGCPKRGFEGSCSQKESEEGNPVRGSEEGSPKKESKKKTLKNDC
EENGLAKESEDDLNKESEEEVGPTKESEEDDSEKESDEDCSEKQSEDGSEREFEENGLEKDLDE
EGSEKELHENVLDKELEENDSENSEFEDDGSEKVLDEEGSEREFDEDSDEKEEEEDTYEKVFDD
ESDEKEDEEYADEKGLEAADKKAEEGDADEKLFEESDDKEDEDADGKEVEDADEKLFEDDDSNE
KLFDEEEDSSEKLFDDSDERGTLGGFGSVEEGPLSTGSSFILSSDDDDDDI

hide sequence

RefSeq Acc Id:

ENSPPAP00000006059 ⟸ ENSPPAT00000026741

Protein Domains

RRM

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSPPAG00000024268	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSPPAT00000026741.1	UniProtKB/TrEMBL
Gene3D-CATH	3.30.70.330	UniProtKB/TrEMBL
InterPro	Nucleotide-bd_a/b_plait_sf	UniProtKB/TrEMBL
	RBD_domain_sf	UniProtKB/TrEMBL
	RRM_dom	UniProtKB/TrEMBL
	TatSF1-like	UniProtKB/TrEMBL
	TatSF1-like_RRM1	UniProtKB/TrEMBL
KEGG Report	pps:100976541	UniProtKB/TrEMBL
NCBI Gene	HTATSF1	ENTREZGENE
PANTHER	HIV TAT-SPECIFIC FACTOR 1	UniProtKB/TrEMBL
	PTHR15608	UniProtKB/TrEMBL
Pfam	RRM_1	UniProtKB/TrEMBL
PROSITE	RRM	UniProtKB/TrEMBL
SMART	RRM	UniProtKB/TrEMBL
Superfamily-SCOP	SSF54928	UniProtKB/TrEMBL
UniProt	A0A2R8ZM86	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar