ARL6IP5 (ADP ribosylation factor like GTPase 6 interacting protein 5) - Rat Genome Database
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Gene: ARL6IP5 (ADP ribosylation factor like GTPase 6 interacting protein 5) Pan paniscus
Analyze
Symbol: ARL6IP5
Name: ADP ribosylation factor like GTPase 6 interacting protein 5
RGD ID: 11871218
Description: ENCODES a protein that exhibits protein C-terminus binding (ortholog); INVOLVED IN cellular response to organic cyclic compound (ortholog); glutathione metabolic process (ortholog); intrinsic apoptotic signaling pathway in response to oxidative stress (ortholog); ASSOCIATED WITH Experimental Neoplasms (ortholog); Neoplastic Cell Transformation (ortholog); Stomach Neoplasms (ortholog); FOUND IN cytoplasm (ortholog); exocytic vesicle (ortholog); membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: ADP-ribosylation-like factor 6 interacting protein 5; PRA1 family protein 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1370,387,605 - 70,408,909 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl370,387,581 - 70,408,909 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0369,020,908 - 69,042,065 (+)NCBIMhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
ARL6IP5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1370,387,605 - 70,408,909 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl370,387,581 - 70,408,909 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0369,020,908 - 69,042,065 (+)NCBIMhudiblu_PPA_v0panPan3
ARL6IP5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl369,084,937 - 69,106,092 (+)EnsemblGRCh38hg38GRCh38
GRCh38369,084,937 - 69,106,092 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37369,134,090 - 69,155,239 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36369,216,780 - 69,237,929 (+)NCBINCBI36hg18NCBI36
Build 34369,216,779 - 69,237,927NCBI
Celera369,062,198 - 69,083,349 (+)NCBI
Cytogenetic Map3p14.1NCBI
HuRef369,135,165 - 69,156,317 (+)NCBIHuRef
CHM1_1369,085,302 - 69,106,451 (+)NCBICHM1_1
Arl6ip5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39697,187,753 - 97,210,276 (+)NCBIGRCm39mm39
GRCm38697,210,792 - 97,233,315 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl697,210,689 - 97,233,315 (+)EnsemblGRCm38mm10GRCm38
MGSCv37697,160,786 - 97,183,309 (+)NCBIGRCm37mm9NCBIm37
MGSCv36697,176,255 - 97,198,778 (+)NCBImm8
Celera699,069,909 - 99,092,703 (+)NCBICelera
Cytogenetic Map6D3NCBI
Arl6ip5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.04129,574,363 - 129,598,240 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4129,574,264 - 129,598,915 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04194,077,777 - 194,099,732 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44131,929,503 - 131,953,033 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.14132,174,335 - 132,198,662 (+)NCBI
Celera4118,691,862 - 118,713,984 (+)NCBICelera
Cytogenetic Map4q34NCBI
Arl6ip5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542118,747,729 - 18,766,408 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542118,747,729 - 18,766,559 (-)NCBIChiLan1.0ChiLan1.0
ARL6IP5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl2022,633,808 - 22,653,870 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.12022,632,613 - 22,653,894 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Arl6ip5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049366031,524,959 - 1,549,923 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ARL6IP5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1350,509,519 - 50,538,967 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11350,509,777 - 50,538,004 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21355,664,791 - 55,668,851 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ARL6IP5
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12230,110,881 - 30,132,186 (+)NCBI
ChlSab1.1 Ensembl2230,111,017 - 30,135,240 (+)Ensembl
Arl6ip5
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247733,666,255 - 3,685,446 (+)NCBI


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003811582 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide SSBP01000021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSPPAT00000043607   ⟹   ENSPPAP00000020810
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl370,387,581 - 70,408,909 (+)Ensembl
RefSeq Acc Id: XM_003811582   ⟹   XP_003811630
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1370,387,605 - 70,408,909 (+)NCBI
Mhudiblu_PPA_v0369,020,908 - 69,042,065 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003811630 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_003811630   ⟸   XM_003811582
- Sequence:
RefSeq Acc Id: ENSPPAP00000020810   ⟸   ENSPPAT00000043607


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000033634 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSPPAP00000020810 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000043607 UniProtKB/TrEMBL
InterPro Prenylated_rab_accept_PRA1 UniProtKB/TrEMBL
KEGG Report pps:100969478 UniProtKB/TrEMBL
NCBI Gene ARL6IP5 ENTREZGENE
Pfam PRA1 UniProtKB/TrEMBL
UniProt A0A2R9AYA3_PANPA UniProtKB/TrEMBL