PAIP1 (poly(A) binding protein interacting protein 1)

Gene: PAIP1 (poly(A) binding protein interacting protein 1) Pan paniscus

Analyze

Symbol:

PAIP1

Name:

poly(A) binding protein interacting protein 1

RGD ID:

11871136

Description:

ENCODES a protein that exhibits RNA binding (inferred); translation activator activity (inferred); INVOLVED IN viral translation (ortholog); ASSOCIATED WITH genetic disease (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN cytoplasm (ortholog); mCRD-mediated mRNA stability complex (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

polyadenylate-binding protein-interacting protein 1

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	4	66,767,973 - 66,799,653 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	5	64,921,599 - 64,954,083 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	5	66,815,814 - 66,848,051 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	5	71,866,623 - 71,898,324 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	5	71,867,224 - 71,913,384 (+)	Ensembl	panpan1.1		panPan2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Neurodevelopmental Disorders (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

CRD-mediated mRNA stabilization (IEA)

negative regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay (IEA)

positive regulation by host of viral process (IEA)

positive regulation of cytoplasmic translation (IEA)

positive regulation of translation (IEA)

regulation of translational initiation (IEA)

viral translation (IEA,ISO)

Cellular Component

cytoplasm (IEA,ISO)

cytosol (IEA)

mCRD-mediated mRNA stability complex (IEA,ISO)

Molecular Function

protein binding (ISO)

RNA binding (IEA)

translation activator activity (IEA)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

PAIP1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	4	66,767,973 - 66,799,653 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	5	64,921,599 - 64,954,083 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	5	66,815,814 - 66,848,051 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	5	71,866,623 - 71,898,324 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	5	71,867,224 - 71,913,384 (+)	Ensembl	panpan1.1		panPan2

PAIP1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	5	43,526,267 - 43,557,411 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	5	43,526,267 - 43,557,758 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	5	43,526,369 - 43,557,513 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	5	43,562,126 - 43,593,244 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	5	43,417,454 - 43,449,931 (-)	NCBI		Celera
Cytogenetic Map	5	p12	NCBI
HuRef	5	43,477,803 - 43,510,165 (-)	NCBI		HuRef
CHM1_1	5	43,527,580 - 43,558,743 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	5	43,778,980 - 43,811,059 (-)	NCBI		T2T-CHM13v2.0

Paip1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	13	119,564,960 - 119,596,858 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	13	119,565,137 - 119,594,754 (+)	Ensembl		GRCm39 Ensembl
GRCm38	13	119,428,331 - 119,460,323 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	13	119,428,601 - 119,458,218 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	13	120,217,407 - 120,249,127 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	13	120,547,809 - 120,576,242 (+)	NCBI		MGSCv36	mm8
Celera	13	123,883,557 - 123,913,895 (+)	NCBI		Celera
Cytogenetic Map	13	D2.3	NCBI
cM Map	13	67.22	NCBI

Paip1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	53,255,916 - 53,282,965 (+)	NCBI		GRCr8
mRatBN7.2	2	51,523,190 - 51,550,241 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	51,522,921 - 51,550,241 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	2	58,642,073 - 58,669,134 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	56,700,784 - 56,727,845 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	51,634,949 - 51,662,000 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	52,300,921 - 52,328,212 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	52,301,798 - 52,328,205 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	70,662,617 - 70,691,628 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	51,610,582 - 51,637,190 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	2	51,538,463 - 51,557,556 (+)	NCBI
Celera	2	47,179,162 - 47,205,199 (+)	NCBI		Celera
Cytogenetic Map	2	q15	NCBI

Paip1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955446	18,801,578 - 18,831,963 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955446	18,801,971 - 18,830,816 (+)	NCBI	ChiLan1.0	ChiLan1.0

PAIP1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	4	66,460,946 - 66,490,437 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	4	66,461,257 - 66,528,051 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	4	66,221,848 - 66,251,623 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	4	66,953,520 - 66,983,319 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	4	66,954,175 - 66,983,336 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	4	66,711,651 - 66,741,420 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	4	66,842,471 - 66,872,080 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	4	67,377,845 - 67,407,634 (+)	NCBI		UU_Cfam_GSD_1.0

Paip1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	209,767,829 - 209,796,873 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936480	18,704,753 - 18,733,368 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936480	18,704,407 - 18,733,368 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PAIP1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	16	28,098,581 - 28,133,788 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	16	28,098,580 - 28,134,296 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	16	29,585,578 - 29,658,741 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PAIP1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	4	42,302,814 - 42,334,174 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	4	42,302,390 - 42,333,536 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666071	32,775,842 - 32,807,407 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Paip1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624759	11,646,848 - 11,686,871 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624759	11,646,632 - 11,687,981 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003811007	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_003811008	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008963358	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_055112396	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JARIFH020000004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSPPAT00000050213 ⟹ ENSPPAP00000027373

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	5	71,867,224 - 71,898,324 (+)	Ensembl

RefSeq Acc Id:

ENSPPAT00000050226 ⟹ ENSPPAP00000027386

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	5	71,867,466 - 71,913,384 (+)	Ensembl

RefSeq Acc Id:

ENSPPAT00000050230 ⟹ ENSPPAP00000027390

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	5	71,867,466 - 71,898,162 (+)	Ensembl

RefSeq Acc Id:

ENSPPAT00000050235 ⟹ ENSPPAP00000027395

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	5	71,867,466 - 71,897,183 (+)	Ensembl

RefSeq Acc Id:

ENSPPAT00000050241 ⟹ ENSPPAP00000027401

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	5	71,867,466 - 71,887,933 (+)	Ensembl

RefSeq Acc Id:

XM_003811007 ⟹ XP_003811055

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	4	66,768,740 - 66,799,653 (+)	NCBI
NHGRI_mPanPan1	5	64,922,367 - 64,954,083 (+)	NCBI
Mhudiblu_PPA_v0	5	66,816,346 - 66,848,051 (+)	NCBI
PanPan1.1	5	71,867,224 - 71,898,324 (+)	NCBI

Sequence:

show sequence

GGGGGAGAACTGGAAAGCCGAGGGTAGCCGAGCGGGGCGGGCGCTCTGGAGCGGCGGGTCCTCG
GGCTGCCGTCCGCTCCGCCAGAACCACCGAGCAGCCGAGCCGGGGCCCGCCGCCCTCCTCCTCC
ATGAGGCCCGAGTGAGGCGCGGCGGCTATAGCCGACCCGCGGCGCCTTCCCCCCGCGTCCTATC
GCGAGCGCAGCGGCAGCGGCCCCTGGAGGAGGAGGCGGAGGAGGAGGAGCATGTCGGACGGTTT
CGATCGGGCCCCAGGTGCTGGTCGGGGCCGGAGCCGGGGCCTGGGCCGCGGAGGGGGCGGGCCT
GAGGGCGGCGGTTTCCCGAACGGAGCGGGGCCTGCTGAGCGGGCGCGGCACCAGCCGCCGCAAC
CCAAAGCCCCGGGCTTCCTGCAGCCACCGCCGCTGCGCCAGCCCAGGACGACCCCGCCGCCAGG
GGCCCAGTGCGAGGTCCCCGCCAGCCCCCAGCGGCCTTCCCGGCCCGGGGCGCTCCCAGAGCAA
ACGAGGCCCCTGAGAGCTCCACCTAGTTCACAGGATAAAATCCCACAGCAGAACTCGGAGTCAG
CAATGGCTAAGCCCCAGGTGGTTGTAGCTCCTGTATTAATGTCTAAGCTGTCTGTGAATGCCCC
TGAATTTTACCCTTCAGGTTATTCTTCCAGTTACACAGAATCCTATGAGGATGGTTGTGAGGAT
TATCCTACTCTATCAGAATATGTTCAGGATTTTTTGAATCATCTTACAGAGCAGCCTGGCAGTT
TTGAAACTGAAATTGAACAGTTTGCAGAGACCCTGAATGGTTGCGTTACAACAGATGATGCTTT
GCAAGAACTTGTGGAACTCATCTATCAACAGGCCACGTCTATCCCAAATTTCTCTTATATGGGA
GCTCGCCTGTGTAATTACCTGTCCCATCATCTGACAATTAGCCCACAGAGTGGCAACTTCCGCC
AATTGCTACTTCAAAGATGTCGGACTGAATATGAAGTTAAAGATCAAGCTGCAAAAGGGGATGA
AGTTACTCGAAAACGATTTCATGCATTTGTACTCTTTCTGGGAGAACTTTATCTTAACCTGGAG
ATCAAGGGAACAAATGGACAGGTTACAAGAGCAGATATTCTTCAGGTTGGTCTTCGAGAATTGC
TGAATGCCCTGTTTTCTAATCCTATGGATGACAATTTAATTTGTGCAGTAAAATTGTTAAAGTT
GACAGGATCAGTTTTGGAAGATGCTTGGAAGGAAAAAGGAAAGATGGATATGGAAGAAATTATT
CAGAGAATTGAAAACGTTGTCCTAGATGCAAACTGCAGTAGAGATGTGAAACAGATGCTCTTGA
AGCTTGTAGAACTCCGGTCAAGTAACTGGGGTAGAGTCCATGCAACTTCAACATATAGAGAAGC
AACACCAGAAAATGATCCTAATTACTTTATGAATGAACCAACATTTTATACATCTGATGGTGTT
CCTTTCACTGCGGCTGATCCAGATTACCAAGAGAAATATCAAGAATTACTTGAAAGAGAGGACT
TTTTTCCAGATTATGAAGAAAATGGAACAGATTTATCCGGGGCTGGTGATGCATACTTGGATGA
TATTGATGATGAGATGGACCCAGAGATAGAAGAAGCTTATGAAAAGTTTTGTTTGGAATCAGAG
CGTAAGCGAAAACAGTAAAGTTAAATTTCAGCATATCAGTTTTATAAAGCAGTTTAGGTATGGT
GATTTAGCAGAACACAGGAGAGCAAGAAAATGTGTCACATCTATACCAAATTAAGGATGTTGAG
TTATGTTACTAATGTATGCAACTTTAATTTTGTTTAACACTATCTGCCAAAATAAACTTTATTC
CCTATAACTTAAAATGTGTATATATATATAATAGTTTATTATGTACAGTTAATTCTACTGTTTT
GGCTGCAATAAAATCGATTTTGAAATAAATGAAATGTTGAAAATTTTGCTAGTTGGTTAGATGC
TTATCCTTTAAATTCTACTTTTCTTGAGGGGAAAAAGTCTTCGTCTGGAAATACATATTACTGC
AAAAATGTAGCATCCTTTTTTAGGTAGGAGTATTATAGCTTTCATTTTAGTTTGACATTTAGTG
TCCCAATGAATTGAATTTCAAATATGAATCATAATCTTGAAAATCTTTAGCACTAAAGTCTTGG
AATATATCAACAACTGATTTACATATGCAGATGCTATTTGATACCAAGGGCTTTTTAAATGTCA
TGGGGGGGAAAAACCCAACTTGGTGAACTCCCAGCTAAACAACCAAGACTTCACTGAAGATTTA
TTCCAATTCTAGAATTGTTCTTTTTTATTTTTATTTTTTCAACTGACTAACTTCATTACCTTAA
AGCCTAGAACATTATTCTGCTTTATTTATATGGCTTTCTCACTTTTATTTTGTAGCATGGGTTG
CATCGACTTTTTTACTAGAGAATTTTACTAGATATTTGTCATTCAAGTTTTCATCTGCTTTATA
ATTGATACACCTTGAGGGTCACTTTTCTAATACTTTTACTATAATGTGGTACCACCTCAGCCCT
AATAAATAATATTTTTACCTAATGTCAAATCTTTTTCCAGCTAACTAAAAACTATGTACAAAAG
GATTGCTTGTAAATATGCATGTAAATAGTTCTGTTAATAACCCACTGTTTTACATTTGGTACAT
CTGTGTCTGCTAATACAGTTAGCTTTCTCACTTTTCTGCTTGTTTGTTCAGTCTGAATTAAAAT
TAGACTTTGAAAATAAAG

hide sequence

RefSeq Acc Id:

XM_003811008 ⟹ XP_003811056

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	4	66,768,644 - 66,799,653 (+)	NCBI
NHGRI_mPanPan1	5	64,922,284 - 64,954,083 (+)	NCBI
Mhudiblu_PPA_v0	5	66,816,355 - 66,848,047 (+)	NCBI
PanPan1.1	5	71,867,151 - 71,898,323 (+)	NCBI

Sequence:

show sequence

GGGCCTCCGGGCCGCAGGGGCCGCTGTGACCCGCCTGCGCCCCTGCCGCGCCGAAGGCGGGGAG
CCGGGTTTTGGGGGAGAACTGGAAAGCCGAGGGTAGCCGAGCGGGGCGGGCGCTCTGGAGCGGC
GGGTCCTCGGGCTGCCGTCCGCTCCGCCAGAACCACCGAGCAGCCGAGCCGGGGCCCGCCGCCC
TCCTCCTCCATGAGGCCCGAGTGAGGCGCGGCGGCTATAGCCGACCCGCGGCGCCTTCCCCCCG
CGTCCTATCGCGAGCGCAGCGGCAGCGGCCCCTGGAGGAGGAGGCGGAGGAGGAGGAGCATGTC
GGACGGTTTCGATCGGGCCCCAGAGCAAACGAGGCCCCTGAGAGCTCCACCTAGTTCACAGGAT
AAAATCCCACAGCAGAACTCGGAGTCAGCAATGGCTAAGCCCCAGGTGGTTGTAGCTCCTGTAT
TAATGTCTAAGCTGTCTGTGAATGCCCCTGAATTTTACCCTTCAGGTTATTCTTCCAGTTACAC
AGAATCCTATGAGGATGGTTGTGAGGATTATCCTACTCTATCAGAATATGTTCAGGATTTTTTG
AATCATCTTACAGAGCAGCCTGGCAGTTTTGAAACTGAAATTGAACAGTTTGCAGAGACCCTGA
ATGGTTGCGTTACAACAGATGATGCTTTGCAAGAACTTGTGGAACTCATCTATCAACAGGCCAC
GTCTATCCCAAATTTCTCTTATATGGGAGCTCGCCTGTGTAATTACCTGTCCCATCATCTGACA
ATTAGCCCACAGAGTGGCAACTTCCGCCAATTGCTACTTCAAAGATGTCGGACTGAATATGAAG
TTAAAGATCAAGCTGCAAAAGGGGATGAAGTTACTCGAAAACGATTTCATGCATTTGTACTCTT
TCTGGGAGAACTTTATCTTAACCTGGAGATCAAGGGAACAAATGGACAGGTTACAAGAGCAGAT
ATTCTTCAGGTTGGTCTTCGAGAATTGCTGAATGCCCTGTTTTCTAATCCTATGGATGACAATT
TAATTTGTGCAGTAAAATTGTTAAAGTTGACAGGATCAGTTTTGGAAGATGCTTGGAAGGAAAA
AGGAAAGATGGATATGGAAGAAATTATTCAGAGAATTGAAAACGTTGTCCTAGATGCAAACTGC
AGTAGAGATGTGAAACAGATGCTCTTGAAGCTTGTAGAACTCCGGTCAAGTAACTGGGGTAGAG
TCCATGCAACTTCAACATATAGAGAAGCAACACCAGAAAATGATCCTAATTACTTTATGAATGA
ACCAACATTTTATACATCTGATGGTGTTCCTTTCACTGCGGCTGATCCAGATTACCAAGAGAAA
TATCAAGAATTACTTGAAAGAGAGGACTTTTTTCCAGATTATGAAGAAAATGGAACAGATTTAT
CCGGGGCTGGTGATGCATACTTGGATGATATTGATGATGAGATGGACCCAGAGATAGAAGAAGC
TTATGAAAAGTTTTGTTTGGAATCAGAGCGTAAGCGAAAACAGTAAAGTTAAATTTCAGCATAT
CAGTTTTATAAAGCAGTTTAGGTATGGTGATTTAGCAGAACACAGGAGAGCAAGAAAATGTGTC
ACATCTATACCAAATTAAGGATGTTGAGTTATGTTACTAATGTATGCAACTTTAATTTTGTTTA
ACACTATCTGCCAAAATAAACTTTATTCCCTATAACTTAAAATGTGTATATATATATAATAGTT
TATTATGTACAGTTAATTCTACTGTTTTGGCTGCAATAAAATCGATTTTGAAATAAATGAAATG
TTGAAAATTTTGCTAGTTGGTTAGATGCTTATCCTTTAAATTCTACTTTTCTTGAGGGGAAAAA
GTCTTCGTCTGGAAATACATATTACTGCAAAAATGTAGCATCCTTTTTTAGGTAGGAGTATTAT
AGCTTTCATTTTAGTTTGACATTTAGTGTCCCAATGAATTGAATTTCAAATATGAATCATAATC
TTGAAAATCTTTAGCACTAAAGTCTTGGAATATATCAACAACTGATTTACATATGCAGATGCTA
TTTGATACCAAGGGCTTTTTAAATGTCATGGGGGGGAAAAACCCAACTTGGTGAACTCCCAGCT
AAACAACCAAGACTTCACTGAAGATTTATTCCAATTCTAGAATTGTTCTTTTTTATTTTTATTT
TTTCAACTGACTAACTTCATTACCTTAAAGCCTAGAACATTATTCTGCTTTATTTATATGGCTT
TCTCACTTTTATTTTGTAGCATGGGTTGCATCGACTTTTTTACTAGAGAATTTTACTAGATATT
TGTCATTCAAGTTTTCATCTGCTTTATAATTGATACACCTTGAGGGTCACTTTTCTAATACTTT
TACTATAATGTGGTACCACCTCAGCCCTAATAAATAATATTTTTACCTAATGTCAAATCTTTTT
CCAGCTAACTAAAAACTATGTACAAAAGGATTGCTTGTAAATATGCATGTAAATAGTTCTGTTA
ATAACCCACTGTTTTACATTTGGTACATCTGTGTCTGCTAATACAGTTAGCTTTCTCACTTTTC
TGCTTGTTTGTTCAGTCTGAATTAAAATTAGACTTTGAAAATAAA

hide sequence

RefSeq Acc Id:

XM_008963358 ⟹ XP_008961606

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	4	66,768,201 - 66,799,653 (+)	NCBI
NHGRI_mPanPan1	5	64,921,830 - 64,954,083 (+)	NCBI
Mhudiblu_PPA_v0	5	66,815,814 - 66,848,051 (+)	NCBI
PanPan1.1	5	71,866,623 - 71,898,323 (+)	NCBI

Sequence:

show sequence

ACATTTTCTTGAAATTTCTGGAGGGGAAGGTTAAAGGGAAGAGAACGAAGCTTGTTAAACGTAG
GTGTGACCTACTGTGGTAAACACCTAGTGTGAATTAAAAAGAGGGGACACATATTTTGATTCCG
TTTCTACTCCCTTCCCCCGATGCTAACGGAGCAGGTGACAGTCTCCCAGGGACCACTCCTCAGC
AGTCCGCGGGTCTCGGCCGGAGCCGAGTCATTGAACACACCTGTGCGCCAGCGAACCCTGGCGC
AGGGTCCACGCCCCCTCCCCCCGTGTTTTTATTTTCCGGGCGTCAACTGTCGGTCTCGCACGTC
TCTCCTGAGAACTACCGAGTAGGTCGGGCCTGCCTGTGAGCAAACGAGGCCCCTGAGAGCTCCA
CCTAGTTCACAGGATAAAATCCCACAGCAGAACTCGGAGTCAGCAATGGCTAAGCCCCAGGTGG
TTGTAGCTCCTGTATTAATGTCTAAGCTGTCTGTGAATGCCCCTGAATTTTACCCTTCAGGTTA
TTCTTCCAGTTACACAGAATCCTATGAGGATGGTTGTGAGGATTATCCTACTCTATCAGAATAT
GTTCAGGATTTTTTGAATCATCTTACAGAGCAGCCTGGCAGTTTTGAAACTGAAATTGAACAGT
TTGCAGAGACCCTGAATGGTTGCGTTACAACAGATGATGCTTTGCAAGAACTTGTGGAACTCAT
CTATCAACAGGCCACGTCTATCCCAAATTTCTCTTATATGGGAGCTCGCCTGTGTAATTACCTG
TCCCATCATCTGACAATTAGCCCACAGAGTGGCAACTTCCGCCAATTGCTACTTCAAAGATGTC
GGACTGAATATGAAGTTAAAGATCAAGCTGCAAAAGGGGATGAAGTTACTCGAAAACGATTTCA
TGCATTTGTACTCTTTCTGGGAGAACTTTATCTTAACCTGGAGATCAAGGGAACAAATGGACAG
GTTACAAGAGCAGATATTCTTCAGGTTGGTCTTCGAGAATTGCTGAATGCCCTGTTTTCTAATC
CTATGGATGACAATTTAATTTGTGCAGTAAAATTGTTAAAGTTGACAGGATCAGTTTTGGAAGA
TGCTTGGAAGGAAAAAGGAAAGATGGATATGGAAGAAATTATTCAGAGAATTGAAAACGTTGTC
CTAGATGCAAACTGCAGTAGAGATGTGAAACAGATGCTCTTGAAGCTTGTAGAACTCCGGTCAA
GTAACTGGGGTAGAGTCCATGCAACTTCAACATATAGAGAAGCAACACCAGAAAATGATCCTAA
TTACTTTATGAATGAACCAACATTTTATACATCTGATGGTGTTCCTTTCACTGCGGCTGATCCA
GATTACCAAGAGAAATATCAAGAATTACTTGAAAGAGAGGACTTTTTTCCAGATTATGAAGAAA
ATGGAACAGATTTATCCGGGGCTGGTGATGCATACTTGGATGATATTGATGATGAGATGGACCC
AGAGATAGAAGAAGCTTATGAAAAGTTTTGTTTGGAATCAGAGCGTAAGCGAAAACAGTAAAGT
TAAATTTCAGCATATCAGTTTTATAAAGCAGTTTAGGTATGGTGATTTAGCAGAACACAGGAGA
GCAAGAAAATGTGTCACATCTATACCAAATTAAGGATGTTGAGTTATGTTACTAATGTATGCAA
CTTTAATTTTGTTTAACACTATCTGCCAAAATAAACTTTATTCCCTATAACTTAAAATGTGTAT
ATATATATAATAGTTTATTATGTACAGTTAATTCTACTGTTTTGGCTGCAATAAAATCGATTTT
GAAATAAATGAAATGTTGAAAATTTTGCTAGTTGGTTAGATGCTTATCCTTTAAATTCTACTTT
TCTTGAGGGGAAAAAGTCTTCGTCTGGAAATACATATTACTGCAAAAATGTAGCATCCTTTTTT
AGGTAGGAGTATTATAGCTTTCATTTTAGTTTGACATTTAGTGTCCCAATGAATTGAATTTCAA
ATATGAATCATAATCTTGAAAATCTTTAGCACTAAAGTCTTGGAATATATCAACAACTGATTTA
CATATGCAGATGCTATTTGATACCAAGGGCTTTTTAAATGTCATGGGGGGGAAAAACCCAACTT
GGTGAACTCCCAGCTAAACAACCAAGACTTCACTGAAGATTTATTCCAATTCTAGAATTGTTCT
TTTTTATTTTTATTTTTTCAACTGACTAACTTCATTACCTTAAAGCCTAGAACATTATTCTGCT
TTATTTATATGGCTTTCTCACTTTTATTTTGTAGCATGGGTTGCATCGACTTTTTTACTAGAGA
ATTTTACTAGATATTTGTCATTCAAGTTTTCATCTGCTTTATAATTGATACACCTTGAGGGTCA
CTTTTCTAATACTTTTACTATAATGTGGTACCACCTCAGCCCTAATAAATAATATTTTTACCTA
ATGTCAAATCTTTTTCCAGCTAACTAAAAACTATGTACAAAAGGATTGCTTGTAAATATGCATG
TAAATAGTTCTGTTAATAACCCACTGTTTTACATTTGGTACATCTGTGTCTGCTAATACAGTTA
GCTTTCTCACTTTTCTGCTTGTTTGTTCAGTCTGAATTAAAATTAGACTTTGAAAATAAA

hide sequence

RefSeq Acc Id:

XM_055112396 ⟹ XP_054968371

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	4	66,767,973 - 66,799,653 (+)	NCBI
NHGRI_mPanPan1	5	64,921,599 - 64,954,083 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_003811055	(Get FASTA)	NCBI Sequence Viewer
	XP_003811056	(Get FASTA)	NCBI Sequence Viewer
	XP_008961606	(Get FASTA)	NCBI Sequence Viewer
	XP_054968371	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSPPAP00000027373
	ENSPPAP00000027373.1
	ENSPPAP00000027386.1
	ENSPPAP00000027390
	ENSPPAP00000027390.1
	ENSPPAP00000027395.1
	ENSPPAP00000027401.1

RefSeq Acc Id:	XP_008961606 ⟸ XM_008963358
- Peptide Label:	isoform X4
- UniProtKB:	A0A2R9BL59 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAKPQVVVAPVLMSKLSVNAPEFYPSGYSSSYTESYEDGCEDYPTLSEYVQDFLNHLTEQPGSF ETEIEQFAETLNGCVTTDDALQELVELIYQQATSIPNFSYMGARLCNYLSHHLTISPQSGNFRQ LLLQRCRTEYEVKDQAAKGDEVTRKRFHAFVLFLGELYLNLEIKGTNGQVTRADILQVGLRELL NALFSNPMDDNLICAVKLLKLTGSVLEDAWKEKGKMDMEEIIQRIENVVLDANCSRDVKQMLLK LVELRSSNWGRVHATSTYREATPENDPNYFMNEPTFYTSDGVPFTAADPDYQEKYQELLEREDF FPDYEENGTDLSGAGDAYLDDIDDEMDPEIEEAYEKFCLESERKRKQ hide sequence

RefSeq Acc Id:	XP_003811056 ⟸ XM_003811008
- Peptide Label:	isoform X3
- UniProtKB:	A0A2R9BL59 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSDGFDRAPEQTRPLRAPPSSQDKIPQQNSESAMAKPQVVVAPVLMSKLSVNAPEFYPSGYSSS YTESYEDGCEDYPTLSEYVQDFLNHLTEQPGSFETEIEQFAETLNGCVTTDDALQELVELIYQQ ATSIPNFSYMGARLCNYLSHHLTISPQSGNFRQLLLQRCRTEYEVKDQAAKGDEVTRKRFHAFV LFLGELYLNLEIKGTNGQVTRADILQVGLRELLNALFSNPMDDNLICAVKLLKLTGSVLEDAWK EKGKMDMEEIIQRIENVVLDANCSRDVKQMLLKLVELRSSNWGRVHATSTYREATPENDPNYFM NEPTFYTSDGVPFTAADPDYQEKYQELLEREDFFPDYEENGTDLSGAGDAYLDDIDDEMDPEIE EAYEKFCLESERKRKQ hide sequence

RefSeq Acc Id:	XP_003811055 ⟸ XM_003811007
- Peptide Label:	isoform X1
- UniProtKB:	A0A2R9BCK4 (UniProtKB/TrEMBL), A0A2R9BL59 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSDGFDRAPGAGRGRSRGLGRGGGGPEGGGFPNGAGPAERARHQPPQPKAPGFLQPPPLRQPRT TPPPGAQCEVPASPQRPSRPGALPEQTRPLRAPPSSQDKIPQQNSESAMAKPQVVVAPVLMSKL SVNAPEFYPSGYSSSYTESYEDGCEDYPTLSEYVQDFLNHLTEQPGSFETEIEQFAETLNGCVT TDDALQELVELIYQQATSIPNFSYMGARLCNYLSHHLTISPQSGNFRQLLLQRCRTEYEVKDQA AKGDEVTRKRFHAFVLFLGELYLNLEIKGTNGQVTRADILQVGLRELLNALFSNPMDDNLICAV KLLKLTGSVLEDAWKEKGKMDMEEIIQRIENVVLDANCSRDVKQMLLKLVELRSSNWGRVHATS TYREATPENDPNYFMNEPTFYTSDGVPFTAADPDYQEKYQELLEREDFFPDYEENGTDLSGAGD AYLDDIDDEMDPEIEEAYEKFCLESERKRKQ hide sequence

RefSeq Acc Id:

ENSPPAP00000027401 ⟸ ENSPPAT00000050241

RefSeq Acc Id:

ENSPPAP00000027373 ⟸ ENSPPAT00000050213

RefSeq Acc Id:

ENSPPAP00000027386 ⟸ ENSPPAT00000050226

RefSeq Acc Id:

ENSPPAP00000027390 ⟸ ENSPPAT00000050230

RefSeq Acc Id:

ENSPPAP00000027395 ⟸ ENSPPAT00000050235

RefSeq Acc Id:	XP_054968371 ⟸ XM_055112396
- Peptide Label:	isoform X2

Protein Domains

Ataxin-2 C-terminal MIF4G

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSPPAG00000036736	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSPPAT00000050213.1	UniProtKB/TrEMBL
	ENSPPAT00000050226.1	UniProtKB/TrEMBL
	ENSPPAT00000050230.1	UniProtKB/TrEMBL
	ENSPPAT00000050235.1	UniProtKB/TrEMBL
	ENSPPAT00000050241.1	UniProtKB/TrEMBL
Gene3D-CATH	1.25.40.180	UniProtKB/TrEMBL
InterPro	ARM-type_fold	UniProtKB/TrEMBL
	Ataxin-2_C	UniProtKB/TrEMBL
	MIF4G-like_typ-3	UniProtKB/TrEMBL
KEGG Report	pps:100990005	UniProtKB/TrEMBL
NCBI Gene	PAIP1	ENTREZGENE
PANTHER	EIF4G DOMAIN PROTEIN	UniProtKB/TrEMBL
	POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 1	UniProtKB/TrEMBL
Pfam	MIF4G	UniProtKB/TrEMBL
	PAM2	UniProtKB/TrEMBL
SMART	MIF4G	UniProtKB/TrEMBL
Superfamily-SCOP	SSF48371	UniProtKB/TrEMBL
UniProt	A0A2R9BCK4	ENTREZGENE, UniProtKB/TrEMBL
	A0A2R9BGI2_PANPA	UniProtKB/TrEMBL
	A0A2R9BGJ4_PANPA	UniProtKB/TrEMBL
	A0A2R9BL59	ENTREZGENE, UniProtKB/TrEMBL
	A0A2R9BL63_PANPA	UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar