TRIM56 (tripartite motif containing 56) - Rat Genome Database

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Gene: TRIM56 (tripartite motif containing 56) Pan paniscus
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Symbol: TRIM56
Name: tripartite motif containing 56
RGD ID: 11870391
Description: ENCODES a protein that exhibits ubiquitin protein ligase activity (ortholog); INVOLVED IN defense response to virus (ortholog); innate immune response (ortholog); negative regulation of viral entry into host cell (ortholog); ASSOCIATED WITH Plasminogen Activator Inhibitor-1 Deficiency (ortholog); pleomorphic xanthoastrocytoma (ortholog); FOUND IN cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: E3 ubiquitin-protein ligase TRIM56
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.17106,467,469 - 106,473,566 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7106,469,474 - 106,471,741 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0793,225,830 - 93,231,127 (+)NCBIMhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (ISO)

Molecular Function

References

Genomics

Comparative Map Data
TRIM56
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.17106,467,469 - 106,473,566 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7106,469,474 - 106,471,741 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0793,225,830 - 93,231,127 (+)NCBIMhudiblu_PPA_v0panPan3
TRIM56
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl7101,085,481 - 101,097,967 (+)EnsemblGRCh38hg38GRCh38
GRCh387101,085,424 - 101,097,967 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh377100,728,762 - 100,741,248 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 367100,515,506 - 100,520,629 (+)NCBINCBI36hg18NCBI36
Build 347100,322,220 - 100,327,322NCBI
Celera795,736,929 - 95,742,103 (+)NCBI
Cytogenetic Map7q22.1NCBI
HuRef795,322,038 - 95,327,161 (+)NCBIHuRef
CHM1_17100,659,047 - 100,665,344 (+)NCBICHM1_1
CRA_TCAGchr7v27100,087,175 - 100,092,298 (+)NCBI
Trim56
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395137,140,140 - 137,145,313 (-)NCBIGRCm39mm39
GRCm39 Ensembl5137,134,498 - 137,145,063 (-)Ensembl
GRCm385137,111,286 - 137,116,462 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5137,105,644 - 137,116,209 (-)EnsemblGRCm38mm10GRCm38
MGSCv375137,587,156 - 137,592,077 (-)NCBIGRCm37mm9NCBIm37
MGSCv365137,395,913 - 137,400,834 (-)NCBImm8
Celera5134,128,782 - 134,133,656 (-)NCBICelera
Cytogenetic Map5G2NCBI
Trim56
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21219,544,913 - 19,567,324 (+)NCBI
Trim56
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545616,182,453 - 16,184,669 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545616,181,890 - 16,185,598 (-)NCBIChiLan1.0ChiLan1.0
TRIM56
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.168,744,970 - 8,752,896 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl68,749,438 - 8,751,753 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha610,442,309 - 10,450,432 (-)NCBI
ROS_Cfam_1.068,564,002 - 8,572,131 (-)NCBI
UMICH_Zoey_3.168,524,312 - 8,532,432 (-)NCBI
UNSW_CanFamBas_1.068,494,757 - 8,502,884 (-)NCBI
UU_Cfam_GSD_1.068,659,509 - 8,667,631 (-)NCBI
Trim56
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344133,024,856 - 133,029,353 (-)NCBI
SpeTri2.0NW_0049365431,007,253 - 1,016,374 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TRIM56
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl38,834,143 - 8,839,415 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.138,834,260 - 8,842,524 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
TRIM56
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12812,093,927 - 12,099,490 (-)NCBI
ChlSab1.1 Ensembl2812,095,421 - 12,097,688 (-)Ensembl
Vero_WHO_p1.0NW_0236660704,255,604 - 4,260,896 (+)NCBI
Trim56
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474016,154,441 - 16,163,057 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000008417   ⟹   ENSPPAP00000001701
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl7106,469,474 - 106,471,741 (+)Ensembl
RefSeq Acc Id: XM_008959251   ⟹   XP_008957499
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.17106,467,613 - 106,473,566 (+)NCBI
Mhudiblu_PPA_v0793,225,849 - 93,231,127 (+)NCBI
Sequence:
RefSeq Acc Id: XM_034964638   ⟹   XP_034820529
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v0793,225,830 - 93,231,127 (+)NCBI
Protein Sequences
Protein RefSeqs XP_008957499 (Get FASTA)   NCBI Sequence Viewer  
  XP_034820529 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_008957499   ⟸   XM_008959251
- Sequence:
RefSeq Acc Id: XP_034820529   ⟸   XM_034964638
RefSeq Acc Id: ENSPPAP00000001701   ⟸   ENSPPAT00000008417
Protein Domains
B box-type   RING-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000007746 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSPPAP00000001701 UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000008417 UniProtKB/TrEMBL
Gene3D-CATH 2.120.10.30 UniProtKB/TrEMBL
  3.30.40.10 UniProtKB/TrEMBL
InterPro 6-blade_b-propeller_TolB-like UniProtKB/TrEMBL
  Znf-RING_LisH UniProtKB/TrEMBL
  Znf_B-box UniProtKB/TrEMBL
  Znf_RING UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
  Znf_RING_CS UniProtKB/TrEMBL
KEGG Report pps:100970481 UniProtKB/TrEMBL
NCBI Gene TRIM56 ENTREZGENE
Pfam zf-B_box UniProtKB/TrEMBL
  zf-RING_UBOX UniProtKB/TrEMBL
PROSITE ZF_BBOX UniProtKB/TrEMBL
  ZF_RING_1 UniProtKB/TrEMBL
  ZF_RING_2 UniProtKB/TrEMBL
SMART BBOX UniProtKB/TrEMBL
  RING UniProtKB/TrEMBL
UniProt A0A2R8Z9M8_PANPA UniProtKB/TrEMBL