C5H6orf47 (chromosome 5 C6orf47 homolog) - Rat Genome Database

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Gene: C5H6orf47 (chromosome 5 C6orf47 homolog) Pan paniscus
Analyze
Symbol: C5H6orf47
Name: chromosome 5 C6orf47 homolog
RGD ID: 11869213
Description: ASSOCIATED WITH megacolon (ortholog); proteasome-associated autoinflammatory syndrome 1 (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: C6H6orf47; chromosome 6 C6orf47 homolog; chromosome 6 open reading frame, human C6orf47; uncharacterized protein C6orf47 homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2546,135,357 - 46,138,979 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1642,096,875 - 42,100,496 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0631,319,493 - 31,322,681 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1632,209,368 - 32,211,819 (-)NCBIpanpan1.1PanPan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

Genomics

Comparative Map Data
C5H6orf47
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2546,135,357 - 46,138,979 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1642,096,875 - 42,100,496 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0631,319,493 - 31,322,681 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1632,209,368 - 32,211,819 (-)NCBIpanpan1.1PanPan1.1panPan2
C6orf47
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38631,658,298 - 31,660,778 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl631,658,298 - 31,660,778 (-)EnsemblGRCh38hg38GRCh38
GRCh37631,626,075 - 31,628,555 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36631,734,054 - 31,736,528 (-)NCBINCBI36Build 36hg18NCBI36
Build 34631,734,053 - 31,736,528NCBI
Celera633,224,296 - 33,226,770 (-)NCBICelera
Cytogenetic Map6p21.33NCBI
HuRef631,412,300 - 31,414,774 (-)NCBIHuRef
CHM1_1631,628,211 - 31,630,685 (-)NCBICHM1_1
T2T-CHM13v2.0631,511,331 - 31,513,811 (-)NCBIT2T-CHM13v2.0
D17H6S53E
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391735,345,378 - 35,347,831 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1735,345,349 - 35,347,831 (+)EnsemblGRCm39 Ensembl
GRCm381735,126,402 - 35,128,855 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1735,126,373 - 35,128,855 (+)EnsemblGRCm38mm10GRCm38
MGSCv371735,264,060 - 35,264,941 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361734,735,171 - 34,736,052 (+)NCBIMGSCv36mm8
Celera1738,224,049 - 38,224,930 (+)NCBICelera
Cytogenetic Map17B1NCBI
cM Map1718.59NCBI
G4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8203,698,359 - 3,701,036 (-)NCBIGRCr8
mRatBN7.2203,693,691 - 3,696,194 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl203,693,649 - 3,696,088 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx204,392,867 - 4,395,193 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0203,754,924 - 3,757,250 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0204,292,702 - 4,295,027 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0205,118,006 - 5,120,332 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl205,118,002 - 5,120,332 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0207,191,210 - 7,193,591 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4203,757,345 - 3,759,671 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1203,758,257 - 3,759,139 (-)NCBI
Celera204,329,625 - 4,331,951 (+)NCBICelera
Cytogenetic Map20p12NCBI
LOC102018324
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955437193,514 - 194,392 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955437192,873 - 195,159 (-)NCBIChiLan1.0ChiLan1.0
C12H6orf47
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1121,142,457 - 1,144,929 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl121,143,216 - 1,144,079 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha121,278,625 - 1,281,110 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0121,287,418 - 1,289,903 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl121,287,854 - 1,289,865 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1121,146,767 - 1,149,253 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0121,214,031 - 1,216,516 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0121,281,098 - 1,283,584 (-)NCBIUU_Cfam_GSD_1.0
CUNH6orf47
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494635,692,687 - 35,694,655 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367271,867,052 - 1,867,933 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367271,866,681 - 1,868,645 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
C7H6orf47
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1723,773,897 - 23,775,346 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2727,476,616 - 27,478,065 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CUNH6orf47
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Vero_WHO_p1.0NW_02366604431,569,176 - 31,572,335 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CUNH6orf47
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475424,552,352 - 24,554,596 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_008956917 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XM_008956917   ⟹   XP_008955165
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2546,135,357 - 46,138,979 (-)NCBI
NHGRI_mPanPan1642,096,875 - 42,100,496 (-)NCBI
Mhudiblu_PPA_v0631,319,493 - 31,322,681 (-)NCBI
PanPan1.1632,209,368 - 32,211,819 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_008955165 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_008955165   ⟸   XM_008956917
- Sequence:


Additional Information

Database Acc Id Source(s)
NCBI Gene C6H6orf47 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2024-03-13 C5H6orf47  chromosome 5 C6orf47 homolog  C6H6orf47  chromosome 6 C6orf47 homolog  Symbol and/or name change 5135510 APPROVED
2018-05-08 C6H6orf47  chromosome 6 C6orf47 homolog    chromosome 6 open reading frame, human C6orf47  Symbol and/or name change 5135510 APPROVED