NIPSNAP2 (nipsnap homolog 2) - Rat Genome Database

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Gene: NIPSNAP2 (nipsnap homolog 2) Pan paniscus
Analyze
Symbol: NIPSNAP2
Name: nipsnap homolog 2
RGD ID: 11869171
Description: ENCODES a protein that exhibits protein-macromolecule adaptor activity (ortholog); INVOLVED IN mitophagy (ortholog); ASSOCIATED WITH autistic disorder (ortholog); genetic disease (ortholog); pleomorphic xanthoastrocytoma (ortholog); FOUND IN cytoplasm (ortholog); mitochondrial matrix (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: GBAS; glioblastoma amplified sequence
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2660,816,887 - 60,852,541 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17109,141,625 - 109,177,269 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0756,577,763 - 56,613,417 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1757,002,007 - 57,036,333 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl757,002,001 - 57,036,333 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
NIPSNAP2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2660,816,887 - 60,852,541 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17109,141,625 - 109,177,269 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0756,577,763 - 56,613,417 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1757,002,007 - 57,036,333 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl757,002,001 - 57,036,333 (+)Ensemblpanpan1.1panPan2
NIPSNAP2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38755,964,585 - 56,000,179 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl755,951,793 - 56,000,181 (+)EnsemblGRCh38hg38GRCh38
GRCh37756,032,278 - 56,067,872 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36755,999,790 - 56,035,365 (+)NCBINCBI36Build 36hg18NCBI36
Build 34755,806,504 - 55,842,080NCBI
Celera767,085,720 - 67,121,305 (+)NCBICelera
Cytogenetic Map7p11.2NCBI
HuRef755,859,717 - 55,881,780 (+)NCBIHuRef
CHM1_1756,035,332 - 56,070,906 (+)NCBICHM1_1
T2T-CHM13v2.0756,124,373 - 56,159,980 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2756,036,517 - 56,072,122 (+)NCBI
Nipsnap2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395129,802,080 - 129,835,391 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5129,802,127 - 129,835,391 (+)EnsemblGRCm39 Ensembl
GRCm385129,725,016 - 129,758,327 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5129,725,063 - 129,758,327 (+)EnsemblGRCm38mm10GRCm38
MGSCv375130,230,950 - 130,264,201 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365130,039,839 - 130,072,958 (+)NCBIMGSCv36mm8
Celera5126,767,493 - 126,802,122 (+)NCBICelera
Cytogenetic Map5G1.3NCBI
cM Map568.26NCBI
Nipsnap2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81232,542,171 - 32,580,345 (-)NCBIGRCr8
mRatBN7.21226,906,068 - 26,944,201 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1226,911,723 - 26,944,166 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1228,042,071 - 28,080,442 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01228,652,611 - 28,690,982 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01227,714,097 - 27,752,470 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01230,527,540 - 30,566,090 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1230,527,540 - 30,566,032 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01232,469,308 - 32,506,704 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41227,928,465 - 27,968,759 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1228,611,780 - 28,649,695 (-)NCBICelera
Cytogenetic Map12q13NCBI
Nipsnap2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554568,176,168 - 8,195,576 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554568,176,171 - 8,195,576 (+)NCBIChiLan1.0ChiLan1.0
NIPSNAP2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.16451,568 - 485,354 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl6451,562 - 484,695 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha62,151,357 - 2,184,908 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.06255,334 - 288,887 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl6222,931 - 288,887 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.16199,323 - 232,868 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.06193,186 - 226,753 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.06363,919 - 397,685 (+)NCBIUU_Cfam_GSD_1.0
Nipsnap2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344126,079,131 - 126,108,317 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365437,928,217 - 7,969,914 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365437,928,250 - 7,957,436 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NIPSNAP2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl316,882,643 - 16,941,739 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1316,910,589 - 16,941,767 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2317,204,598 - 17,220,135 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NIPSNAP2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1212,773,970 - 2,810,977 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666041179,985,129 - 180,022,510 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nipsnap2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247408,176,656 - 8,209,029 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247408,176,682 - 8,207,790 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000065439   ⟹   ENSPPAP00000042509
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl757,002,001 - 57,036,333 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000065441   ⟹   ENSPPAP00000042511
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl757,015,121 - 57,035,226 (+)Ensembl
RefSeq Acc Id: XM_034964171   ⟹   XP_034820062
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2660,816,887 - 60,852,541 (+)NCBI
NHGRI_mPanPan17109,141,625 - 109,177,269 (+)NCBI
Mhudiblu_PPA_v0756,577,763 - 56,613,417 (+)NCBI
RefSeq Acc Id: XM_057302881   ⟹   XP_057158864
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2660,816,887 - 60,852,541 (+)NCBI
NHGRI_mPanPan17109,141,625 - 109,177,269 (+)NCBI
Protein Sequences
Protein RefSeqs XP_034820062 (Get FASTA)   NCBI Sequence Viewer  
  XP_057158864 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000042509.1
  ENSPPAP00000042511.1
Reference Protein Sequences
RefSeq Acc Id: XP_034820062   ⟸   XM_034964171
- Peptide Label: isoform X1
- UniProtKB: A0A2R9CKL1 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSPPAP00000042511   ⟸   ENSPPAT00000065441
RefSeq Acc Id: ENSPPAP00000042509   ⟸   ENSPPAT00000065439
RefSeq Acc Id: XP_057158864   ⟸   XM_057302881
- Peptide Label: isoform X2
Protein Domains
NIPSNAP


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000043822 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000065439.1 UniProtKB/TrEMBL
  ENSPPAT00000065441.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.100 UniProtKB/TrEMBL
InterPro Dimeric_a/b-barrel UniProtKB/TrEMBL
  NIPSNAP UniProtKB/TrEMBL
NCBI Gene GBAS ENTREZGENE
PANTHER NIPSNAP-RELATED UniProtKB/TrEMBL
  PROTEIN NIPSNAP HOMOLOG 2 UniProtKB/TrEMBL
Pfam NIPSNAP UniProtKB/TrEMBL
Superfamily-SCOP SSF54909 UniProtKB/TrEMBL
UniProt A0A2R9CKL1 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9CKM1_PANPA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-03-21 NIPSNAP2  nipsnap homolog 2  GBAS  glioblastoma amplified sequence  Symbol and/or name change 5135510 APPROVED