PIERCE1 (piercer of microtubule wall 1) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: PIERCE1 (piercer of microtubule wall 1) Pan paniscus
Analyze
Symbol: PIERCE1
Name: piercer of microtubule wall 1
RGD ID: 11866825
Description: INVOLVED IN cellular response to UV-C (ortholog); determination of left/right symmetry (ortholog); DNA damage response (ortholog); ASSOCIATED WITH Adams-Oliver Syndrome 5 (ortholog); developmental and epileptic encephalopathy 14 (ortholog); Ehlers-Danlos syndrome classic type 1 (ortholog); FOUND IN axonemal A tubule inner sheath (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: C9H9orf116; chromosome 9 C9orf116 homolog; chromosome 9 open reading frame, human C9orf116; UPF0691 protein C9orf116 homolog; UPF0691 protein C9orf116-like
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2113,817,958 - 3,823,335 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan193,821,008 - 3,825,668 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v09106,635,911 - 106,641,274 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19135,628,471 - 135,633,837 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9135,628,471 - 135,633,837 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
PIERCE1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2113,817,958 - 3,823,335 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan193,821,008 - 3,825,668 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v09106,635,911 - 106,641,274 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19135,628,471 - 135,633,837 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9135,628,471 - 135,633,837 (-)Ensemblpanpan1.1panPan2
PIERCE1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389135,495,181 - 135,499,869 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9135,495,181 - 135,501,734 (-)EnsemblGRCh38hg38GRCh38
GRCh379138,387,027 - 138,391,715 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 369137,526,847 - 137,531,582 (-)NCBINCBI36Build 36hg18NCBI36
Build 349135,612,972 - 135,619,525NCBI
Celera9108,904,156 - 108,908,891 (-)NCBICelera
Cytogenetic Map9q34.3NCBI
HuRef9107,848,849 - 107,853,587 (-)NCBIHuRef
CHM1_19138,535,605 - 138,540,340 (-)NCBICHM1_1
T2T-CHM13v2.09147,723,256 - 147,727,947 (-)NCBIT2T-CHM13v2.0
Pierce1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39228,352,013 - 28,356,336 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl228,352,013 - 28,356,344 (-)EnsemblGRCm39 Ensembl
GRCm38228,462,001 - 28,466,324 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl228,462,001 - 28,466,332 (-)EnsemblGRCm38mm10GRCm38
MGSCv37228,317,521 - 28,321,844 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36228,283,836 - 28,288,373 (-)NCBIMGSCv36mm8
Celera228,166,282 - 28,170,605 (-)NCBICelera
Cytogenetic Map2A3NCBI
cM Map219.38NCBI
Pierce1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8332,195,024 - 32,201,111 (-)NCBIGRCr8
mRatBN7.2311,797,031 - 11,801,568 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl311,797,031 - 11,801,568 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx314,869,442 - 14,873,974 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0323,454,393 - 23,458,924 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0321,708,839 - 21,713,370 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.037,047,603 - 7,051,953 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl37,047,603 - 7,051,953 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0312,398,276 - 12,402,626 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.437,451,982 - 7,456,519 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.137,452,435 - 7,456,794 (-)NCBI
Celera36,578,429 - 6,582,978 (-)NCBICelera
Cytogenetic Map3p12NCBI
Pierce1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555134,052,413 - 4,055,691 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555134,047,764 - 4,055,692 (-)NCBIChiLan1.0ChiLan1.0
PIERCE1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1951,207,491 - 51,209,955 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl951,207,493 - 51,210,257 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha950,503,815 - 50,507,454 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0952,097,744 - 52,101,382 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1950,876,577 - 50,880,209 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0951,201,095 - 51,204,720 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0951,280,221 - 51,283,856 (-)NCBIUU_Cfam_GSD_1.0
Pierce1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947201,303,187 - 201,307,728 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366692,067,612 - 2,071,788 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366692,067,544 - 2,072,052 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PIERCE1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa10.21308,630,223 - 308,635,570 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PIERCE1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1122,669,623 - 2,674,929 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl122,670,241 - 2,675,646 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660582,482,940 - 2,488,274 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pierce1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247603,109,127 - 3,112,526 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247603,095,656 - 3,112,545 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000002979   ⟹   ENSPPAP00000000656
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl9135,628,471 - 135,633,837 (-)Ensembl
RefSeq Acc Id: XM_003816939   ⟹   XP_003816987
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2113,817,958 - 3,823,335 (+)NCBI
NHGRI_mPanPan193,821,008 - 3,825,668 (+)NCBI
Mhudiblu_PPA_v09106,635,911 - 106,640,599 (-)NCBI
PanPan1.19135,628,471 - 135,633,837 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008970047   ⟹   XP_008968295
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2113,817,958 - 3,823,335 (+)NCBI
NHGRI_mPanPan193,821,008 - 3,825,668 (+)NCBI
Mhudiblu_PPA_v09106,635,911 - 106,641,274 (-)NCBI
PanPan1.19135,628,471 - 135,633,837 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003816987 (Get FASTA)   NCBI Sequence Viewer  
  XP_008968295 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000000656.1
Reference Protein Sequences
RefSeq Acc Id: XP_008968295   ⟸   XM_008970047
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_003816987   ⟸   XM_003816939
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSPPAP00000000656   ⟸   ENSPPAT00000002979


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000002608 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000002979.1 UniProtKB/TrEMBL
InterPro UPF0691 UniProtKB/TrEMBL
KEGG Report pps:100968252 UniProtKB/TrEMBL
NCBI Gene C9H9orf116 ENTREZGENE
PANTHER PIERCER OF MICROTUBULE WALL 1 PROTEIN UniProtKB/TrEMBL
  PTHR20899 UniProtKB/TrEMBL
Pfam DUF4490 UniProtKB/TrEMBL
UniProt A0A2R8ZDG2_PANPA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-12-07 PIERCE1  piercer of microtubule wall 1  C9H9orf116  chromosome 9 C9orf116 homolog  Symbol and/or name change 5135510 APPROVED
2018-05-08 C9H9orf116  chromosome 9 C9orf116 homolog    chromosome 9 open reading frame, human C9orf116  Symbol and/or name change 5135510 APPROVED