C7 (complement C7) - Rat Genome Database

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Gene: C7 (complement C7) Pan paniscus
Analyze
Symbol: C7
Name: complement C7
RGD ID: 11865066
Description: INVOLVED IN intracellular sodium ion homeostasis (ortholog); ASSOCIATED WITH complement component 7 deficiency (ortholog); Experimental Liver Cirrhosis (ortholog); genetic disease (ortholog); FOUND IN membrane attack complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: complement component C7
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2469,354,717 - 69,429,838 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1567,510,052 - 67,583,432 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0569,405,041 - 69,478,445 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1574,447,559 - 74,520,730 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl574,447,559 - 74,520,649 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
C7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2469,354,717 - 69,429,838 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1567,510,052 - 67,583,432 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0569,405,041 - 69,478,445 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1574,447,559 - 74,520,730 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl574,447,559 - 74,520,649 (-)Ensemblpanpan1.1panPan2
C7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38540,909,497 - 40,984,643 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl540,909,492 - 41,020,216 (+)EnsemblGRCh38hg38GRCh38
GRCh37540,909,599 - 40,984,745 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36540,945,356 - 41,018,798 (+)NCBINCBI36Build 36hg18NCBI36
Build 34540,945,355 - 41,018,796NCBI
Celera540,798,197 - 40,871,625 (+)NCBICelera
Cytogenetic Map5p13.1NCBI
HuRef540,861,350 - 40,935,010 (+)NCBIHuRef
CHM1_1540,911,673 - 40,985,046 (+)NCBICHM1_1
T2T-CHM13v2.0541,165,912 - 41,241,067 (+)NCBIT2T-CHM13v2.0
C7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39155,017,232 - 5,093,230 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl155,018,244 - 5,093,222 (-)EnsemblGRCm39 Ensembl
GRCm38154,987,750 - 5,063,773 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl154,988,762 - 5,063,740 (-)EnsemblGRCm38mm10GRCm38
MGSCv37154,938,822 - 5,013,662 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36154,936,037 - 5,010,877 (-)NCBIMGSCv36mm8
Celera154,838,417 - 4,913,553 (-)NCBICelera
Cytogenetic Map15A1NCBI
cM Map151.98NCBI
C7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8255,815,687 - 55,892,605 (-)NCBIGRCr8
mRatBN7.2254,088,116 - 54,165,102 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl254,088,116 - 54,158,535 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0254,707,621 - 54,781,624 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl254,709,138 - 54,777,729 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0273,735,309 - 73,806,693 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4254,147,136 - 54,250,803 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1254,080,702 - 54,129,568 (-)NCBI
Celera249,739,049 - 49,813,376 (-)NCBICelera
Cytogenetic Map2q16NCBI
C7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495542625,173,463 - 25,230,897 (+)NCBIChiLan1.0ChiLan1.0
C7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1468,450,660 - 68,502,753 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl468,451,578 - 68,513,386 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha468,133,714 - 68,185,839 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0468,962,923 - 69,015,455 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl468,962,925 - 69,015,307 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1468,722,997 - 68,775,078 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0468,835,383 - 68,888,145 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0469,374,269 - 69,426,946 (-)NCBIUU_Cfam_GSD_1.0
C7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213229,634,993 - 229,684,377 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365181,689,328 - 1,731,770 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365181,687,482 - 1,736,463 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
C7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1625,846,860 - 25,903,980 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11625,846,860 - 25,902,707 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21627,055,926 - 27,111,985 (-)NCBISscrofa10.2Sscrofa10.2susScr3
C7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1439,671,625 - 39,752,336 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl439,671,551 - 39,753,626 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607130,096,885 - 30,178,561 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
C7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475913,992,681 - 14,114,411 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475913,991,104 - 14,114,271 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000043627   ⟹   ENSPPAP00000020830
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl574,447,559 - 74,520,649 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000043642   ⟹   ENSPPAP00000020845
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl574,448,924 - 74,501,599 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000043645   ⟹   ENSPPAP00000020848
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl574,449,869 - 74,520,649 (-)Ensembl
RefSeq Acc Id: XM_003810975   ⟹   XP_003811023
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2469,354,717 - 69,429,838 (-)NCBI
NHGRI_mPanPan1567,510,052 - 67,583,432 (-)NCBI
Mhudiblu_PPA_v0569,405,041 - 69,478,445 (-)NCBI
PanPan1.1574,447,559 - 74,520,730 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003811023 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000020830
  ENSPPAP00000020830.1
  ENSPPAP00000020845.1
  ENSPPAP00000020848.1
Reference Protein Sequences
RefSeq Acc Id: XP_003811023   ⟸   XM_003810975
- UniProtKB: A0A2R9AYC3 (UniProtKB/TrEMBL),   A0A2R9AYD6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSPPAP00000020830   ⟸   ENSPPAT00000043627
RefSeq Acc Id: ENSPPAP00000020848   ⟸   ENSPPAT00000043645
RefSeq Acc Id: ENSPPAP00000020845   ⟸   ENSPPAT00000043642
Protein Domains
MACPF   Sushi


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000033591 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000043627.1 UniProtKB/TrEMBL
  ENSPPAT00000043642.1 UniProtKB/TrEMBL
  ENSPPAT00000043645.1 UniProtKB/TrEMBL
Gene3D-CATH 2.20.100.10 UniProtKB/TrEMBL
  3.30.60.30 UniProtKB/TrEMBL
  4.10.400.10 UniProtKB/TrEMBL
  Complement Module, domain 1 UniProtKB/TrEMBL
InterPro C7_FIM2_N UniProtKB/TrEMBL
  C7_KAZAL UniProtKB/TrEMBL
  FacI_MAC UniProtKB/TrEMBL
  Kazal_3 UniProtKB/TrEMBL
  LDL_receptor-like_sf UniProtKB/TrEMBL
  LDLR_class-A_CS UniProtKB/TrEMBL
  LDrepeatLR_classA_rpt UniProtKB/TrEMBL
  MAC_perforin UniProtKB/TrEMBL
  MACPF UniProtKB/TrEMBL
  MACPF_CS UniProtKB/TrEMBL
  Sushi/SCR/CCP_sf UniProtKB/TrEMBL
  Sushi_SCR_CCP_dom UniProtKB/TrEMBL
  TSP1_rpt UniProtKB/TrEMBL
  TSP1_rpt_sf UniProtKB/TrEMBL
KEGG Report pps:100977761 UniProtKB/TrEMBL
NCBI Gene C7 ENTREZGENE
PANTHER COMPLEMENT COMPONENT C6 UniProtKB/TrEMBL
  PTHR45742:SF2 UniProtKB/TrEMBL
Pfam C7_FIM2_N UniProtKB/TrEMBL
  C7_KAZAL UniProtKB/TrEMBL
  Kazal_3 UniProtKB/TrEMBL
  Ldl_recept_a UniProtKB/TrEMBL
  MACPF UniProtKB/TrEMBL
  Sushi UniProtKB/TrEMBL
  TSP_1 UniProtKB/TrEMBL
PRINTS COMPLEMENTC9 UniProtKB/TrEMBL
  TSP1REPEAT UniProtKB/TrEMBL
PROSITE LDLRA_1 UniProtKB/TrEMBL
  LDLRA_2 UniProtKB/TrEMBL
  MACPF_1 UniProtKB/TrEMBL
  MACPF_2 UniProtKB/TrEMBL
  SUSHI UniProtKB/TrEMBL
  TSP1 UniProtKB/TrEMBL
SMART CCP UniProtKB/TrEMBL
  FIMAC UniProtKB/TrEMBL
  LDLa UniProtKB/TrEMBL
  MACPF UniProtKB/TrEMBL
  TSP1 UniProtKB/TrEMBL
Superfamily-SCOP SSF57424 UniProtKB/TrEMBL
  SSF57535 UniProtKB/TrEMBL
  SSF82895 UniProtKB/TrEMBL
UniProt A0A2R9AUH1_PANPA UniProtKB/TrEMBL
  A0A2R9AYC3 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9AYD6 ENTREZGENE, UniProtKB/TrEMBL