LOC100978706 (gamma-crystallin B) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: LOC100978706 (gamma-crystallin B) Pan paniscus
Analyze
Symbol: LOC100978706 (Ensembl: CRYGB)
Name: gamma-crystallin B (Ensembl:crystallin gamma B)
RGD ID: 11864056
Description: ENCODES a protein that exhibits structural constituent of eye lens (inferred); INVOLVED IN eye development (ortholog); lens development in camera-type eye (ortholog); lens fiber cell development (ortholog); ASSOCIATED WITH cataract 39 multiple types (ortholog); genetic disease (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN cytoplasm (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: CRYGB; crystallin gamma B
RGD Orthologs
Human
Mouse
Rat
Dog
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213110,748,024 - 110,753,105 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B110,763,000 - 110,768,081 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B95,373,199 - 95,378,131 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B213,497,286 - 213,500,951 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B213,497,286 - 213,500,951 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA)
nucleus  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:17564961   PMID:30032202  


Genomics

Comparative Map Data
LOC100978706
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213110,748,024 - 110,753,105 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B110,763,000 - 110,768,081 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B95,373,199 - 95,378,131 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B213,497,286 - 213,500,951 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B213,497,286 - 213,500,951 (-)Ensemblpanpan1.1panPan2
CRYGB
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382208,142,573 - 208,146,158 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2208,142,573 - 208,146,158 (-)EnsemblGRCh38hg38GRCh38
GRCh372209,007,297 - 209,010,882 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362208,715,542 - 208,719,122 (-)NCBINCBI36Build 36hg18NCBI36
Build 342208,832,802 - 208,836,386NCBI
Celera2202,775,571 - 202,779,097 (-)NCBICelera
Cytogenetic Map2q33.3NCBI
HuRef2200,855,757 - 200,859,294 (-)NCBIHuRef
CHM1_12209,013,085 - 209,016,704 (-)NCBICHM1_1
T2T-CHM13v2.02208,622,590 - 208,626,302 (-)NCBIT2T-CHM13v2.0
Crygb
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39165,119,381 - 65,121,449 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl165,119,378 - 65,121,447 (-)EnsemblGRCm39 Ensembl
GRCm38165,080,222 - 65,082,290 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl165,080,219 - 65,082,288 (-)EnsemblGRCm38mm10GRCm38
MGSCv37165,126,801 - 65,128,841 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36165,014,503 - 65,016,543 (-)NCBIMGSCv36mm8
Celera165,573,413 - 65,575,453 (-)NCBICelera
Cytogenetic Map1C2NCBI
cM Map132.82NCBI
Crygb
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8973,955,204 - 73,957,264 (-)NCBIGRCr8
mRatBN7.2966,461,460 - 66,463,520 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl966,461,460 - 66,463,520 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx974,974,717 - 74,976,777 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0980,109,999 - 80,112,059 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0978,518,408 - 78,520,468 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0971,796,204 - 71,798,265 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl971,796,204 - 71,798,265 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0970,771,494 - 70,773,555 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4963,730,906 - 63,732,966 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera963,857,232 - 63,859,292 (-)NCBICelera
Cytogenetic Map9q32NCBI
CRYGB
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13716,440,804 - 16,442,823 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3716,440,805 - 16,442,912 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3717,323,904 - 17,325,920 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03716,376,454 - 16,378,472 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3716,367,491 - 16,379,514 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13716,321,158 - 16,323,174 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03716,294,463 - 16,296,479 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03716,303,543 - 16,305,558 (-)NCBIUU_Cfam_GSD_1.0
LOC100156107
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.115111,267,071 - 111,268,898 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215122,786,581 - 122,788,663 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103217733
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11093,945,141 - 93,950,725 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666040105,420,483 - 105,423,997 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000021346   ⟹   ENSPPAP00000004660
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2B213,497,286 - 213,500,951 (-)Ensembl
RefSeq Acc Id: XM_055108400   ⟹   XP_054964375
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v213110,748,024 - 110,753,105 (-)NCBI
NHGRI_mPanPan12B110,763,000 - 110,768,081 (-)NCBI
Protein Sequences
Protein RefSeqs XP_054964375 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein ABS19090 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000004660.1
Reference Protein Sequences
RefSeq Acc Id: ENSPPAP00000004660   ⟸   ENSPPAT00000021346
RefSeq Acc Id: XP_054964375   ⟸   XM_055108400
Protein Domains
Beta/gamma crystallin 'Greek key'


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000019473 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000021346.1 UniProtKB/TrEMBL
Gene3D-CATH Crystallins UniProtKB/TrEMBL
InterPro Beta/gamma_crystallin UniProtKB/TrEMBL
  G_crystallin-like UniProtKB/TrEMBL
NCBI Gene CRYGB ENTREZGENE
PANTHER BETA/GAMMA CRYSTALLIN UniProtKB/TrEMBL
  GAMMA-CRYSTALLIN B UniProtKB/TrEMBL
Pfam Crystall UniProtKB/TrEMBL
PRINTS BGCRYSTALLIN UniProtKB/TrEMBL
PROSITE CRYSTALLIN_BETA_GAMMA UniProtKB/TrEMBL
SMART XTALbg UniProtKB/TrEMBL
Superfamily-SCOP SSF49695 UniProtKB/TrEMBL
UniProt A7KK37_PANPA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-04-25 LOC100978706  gamma-crystallin B  CRYGB  crystallin gamma B  Symbol and/or name change 5135510 APPROVED