LOC100973858 (keratin, type I cuticular Ha7-like) - Rat Genome Database

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Gene: LOC100973858 (keratin, type I cuticular Ha7-like) Pan paniscus
Analyze
Symbol: LOC100973858
Name: keratin, type I cuticular Ha7-like
RGD ID: 11863924
Description: ENCODES a protein that exhibits structural molecule activity (inferred); INVOLVED IN epithelial cell differentiation (inferred); intermediate filament organization (inferred); FOUND IN cytoskeleton (inferred); intermediate filament (inferred)
Type: protein-coding
RefSeq Status: MODEL
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21923,573,030 - 23,578,292 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11725,463,009 - 25,468,271 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01715,904,986 - 15,910,248 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11716,122,395 - 16,127,653 (+)NCBIpanpan1.1PanPan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003813834 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_003813834   ⟹   XP_003813882
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21923,573,030 - 23,578,292 (+)NCBI
NHGRI_mPanPan11725,463,009 - 25,468,271 (+)NCBI
Mhudiblu_PPA_v01715,904,986 - 15,910,248 (+)NCBI
PanPan1.11716,122,395 - 16,127,653 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003813882 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000033248.1
Reference Protein Sequences
RefSeq Acc Id: XP_003813882   ⟸   XM_003813834
- Sequence:
Protein Domains
IF rod


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000039499 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000056122.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.170 UniProtKB/TrEMBL
  Single helix bin UniProtKB/TrEMBL
  Vasodilator-stimulated phosphoprotein UniProtKB/TrEMBL
InterPro IF_conserved UniProtKB/TrEMBL
  IF_rod_dom UniProtKB/TrEMBL
  Keratin_I UniProtKB/TrEMBL
KEGG Report pps:100973858 UniProtKB/TrEMBL
NCBI Gene LOC100973858 ENTREZGENE
PANTHER IF ROD DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
  PTHR23239 UniProtKB/TrEMBL
Pfam Filament UniProtKB/TrEMBL
PRINTS TYPE1KERATIN UniProtKB/TrEMBL
PROSITE IF_ROD_1 UniProtKB/TrEMBL
  IF_ROD_2 UniProtKB/TrEMBL
SMART Filament UniProtKB/TrEMBL
Superfamily-SCOP Intermediate filament protein, coiled coil region UniProtKB/TrEMBL
UniProt A0A2R9BU98_PANPA UniProtKB/TrEMBL