TBC1D24 (TBC1 domain family member 24) - Rat Genome Database

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Gene: TBC1D24 (TBC1 domain family member 24) Pan paniscus
Analyze
Symbol: TBC1D24
Name: TBC1 domain family member 24
RGD ID: 11862923
Description: INVOLVED IN axon development (ortholog); cellular response to oxidative stress (ortholog); dendrite development (ortholog); ASSOCIATED WITH autosomal dominant nocturnal frontal lobe epilepsy (ortholog); autosomal dominant nonsyndromic deafness 65 (ortholog); autosomal recessive nonsyndromic deafness 86 (ortholog); FOUND IN cell junction (inferred); cytoplasm (inferred); cytoplasmic vesicle (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2182,976,738 - 3,011,361 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1166,757,748 - 6,788,439 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0161,331,630 - 1,362,320 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1162,581,835 - 2,603,919 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl162,581,835 - 2,603,912 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
TBC1D24
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2182,976,738 - 3,011,361 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1166,757,748 - 6,788,439 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0161,331,630 - 1,362,320 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1162,581,835 - 2,603,919 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl162,581,835 - 2,603,912 (+)Ensemblpanpan1.1panPan2
TBC1D24
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38162,475,127 - 2,505,730 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl162,475,051 - 2,509,671 (+)EnsemblGRCh38hg38GRCh38
GRCh37162,525,128 - 2,555,731 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36162,465,148 - 2,493,500 (+)NCBINCBI36Build 36hg18NCBI36
Celera162,760,729 - 2,768,193 (+)NCBICelera
Cytogenetic Map16p13.3NCBI
HuRef162,472,128 - 2,481,831 (+)NCBIHuRef
CHM1_1162,525,041 - 2,555,671 (+)NCBICHM1_1
T2T-CHM13v2.0162,497,257 - 2,531,799 (+)NCBIT2T-CHM13v2.0
Tbc1d24
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391724,394,405 - 24,424,536 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1724,394,405 - 24,424,536 (-)EnsemblGRCm39 Ensembl
GRCm381724,175,431 - 24,205,562 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1724,175,431 - 24,205,562 (-)EnsemblGRCm38mm10GRCm38
MGSCv371724,312,376 - 24,342,507 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361723,906,386 - 23,933,115 (-)NCBIMGSCv36mm8
Celera1724,680,659 - 24,710,996 (-)NCBICelera
Cytogenetic Map17A3.3NCBI
cM Map1712.3NCBI
Tbc1d24
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81013,711,930 - 13,740,902 (-)NCBIGRCr8
mRatBN7.21013,205,819 - 13,236,013 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1013,209,895 - 13,236,050 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1017,955,085 - 17,980,715 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01017,443,924 - 17,469,554 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01012,942,419 - 12,968,398 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01013,551,100 - 13,576,739 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1013,551,100 - 13,558,384 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01013,367,060 - 13,392,774 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41013,429,738 - 13,456,667 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11013,432,283 - 13,444,158 (-)NCBI
Celera1012,896,302 - 12,921,877 (-)NCBICelera
Cytogenetic Map10q12NCBI
Tbc1d24
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544214,812,566 - 14,823,224 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544214,816,213 - 14,823,132 (-)NCBIChiLan1.0ChiLan1.0
TBC1D24
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1638,531,547 - 38,557,472 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha639,769,612 - 39,796,058 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0638,840,471 - 38,866,927 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl638,840,528 - 38,866,914 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1638,525,620 - 38,552,059 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0638,498,219 - 38,524,683 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0638,974,367 - 39,000,835 (-)NCBIUU_Cfam_GSD_1.0
Tbc1d24
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344105,145,718 - 105,151,782 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366941,556,244 - 1,569,201 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366941,556,717 - 1,582,019 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TBC1D24
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl339,545,218 - 39,571,277 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1339,545,688 - 39,572,320 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2342,686,824 - 42,691,216 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TBC1D24
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.152,353,543 - 2,378,950 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366606828,651,927 - 28,683,478 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tbc1d24
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624824243,939 - 254,249 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624824245,717 - 251,603 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSPPAT00000062838   ⟹   ENSPPAP00000039925
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl162,581,835 - 2,603,912 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000062840   ⟹   ENSPPAP00000039927
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl162,581,835 - 2,603,912 (+)Ensembl
RefSeq Acc Id: XM_034940963   ⟹   XP_034796854
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2182,976,739 - 3,011,361 (+)NCBI
NHGRI_mPanPan1166,757,749 - 6,788,439 (+)NCBI
Mhudiblu_PPA_v0161,331,630 - 1,362,320 (+)NCBI
RefSeq Acc Id: XM_034940964   ⟹   XP_034796855
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2182,976,739 - 3,011,361 (+)NCBI
NHGRI_mPanPan1166,757,749 - 6,788,439 (+)NCBI
Mhudiblu_PPA_v0161,331,630 - 1,358,434 (+)NCBI
RefSeq Acc Id: XM_034940965   ⟹   XP_034796856
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2182,976,739 - 3,011,361 (+)NCBI
NHGRI_mPanPan1166,757,748 - 6,788,439 (+)NCBI
Mhudiblu_PPA_v0161,331,630 - 1,362,320 (+)NCBI
RefSeq Acc Id: XM_055100654   ⟹   XP_054956629
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2182,984,624 - 3,011,361 (+)NCBI
NHGRI_mPanPan1166,765,634 - 6,788,439 (+)NCBI
RefSeq Acc Id: XM_063598219   ⟹   XP_063454289
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2182,984,624 - 3,011,361 (+)NCBI
RefSeq Acc Id: XM_063598220   ⟹   XP_063454290
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2182,976,738 - 3,011,361 (+)NCBI
RefSeq Acc Id: XP_034796854   ⟸   XM_034940963
- Peptide Label: isoform X1
- UniProtKB: A0A2R9CDB4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034796856   ⟸   XM_034940965
- Peptide Label: isoform X2
- UniProtKB: A0A2R9CNR8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034796855   ⟸   XM_034940964
- Peptide Label: isoform X1
- UniProtKB: A0A2R9CDB4 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSPPAP00000039925   ⟸   ENSPPAT00000062838
Ensembl Acc Id: ENSPPAP00000039927   ⟸   ENSPPAT00000062840
RefSeq Acc Id: XP_054956629   ⟸   XM_055100654
- Peptide Label: isoform X1
- UniProtKB: A0A2R9CDB4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063454290   ⟸   XM_063598220
- Peptide Label: isoform X2
- UniProtKB: A0A2R9CNR8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063454289   ⟸   XM_063598219
- Peptide Label: isoform X2
- UniProtKB: A0A2R9CNR8 (UniProtKB/TrEMBL)
Protein Domains
TLDc


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000042625 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000062838.1 UniProtKB/TrEMBL
  ENSPPAT00000062840.1 UniProtKB/TrEMBL
Gene3D-CATH Ypt/Rab-GAP domain of gyp1p, domain 3 UniProtKB/TrEMBL
InterPro Rab-GTPase-TBC_dom UniProtKB/TrEMBL
  Rab-GTPase_TBC_sf UniProtKB/TrEMBL
  TLDc_dom UniProtKB/TrEMBL
NCBI Gene TBC1D24 ENTREZGENE
PANTHER GTPASE-ACTIVATING PROTEIN SKYWALKER UniProtKB/TrEMBL
  NUCLEOLAR PROTEIN 7/ESTROGEN RECEPTOR COACTIVATOR-RELATED UniProtKB/TrEMBL
Pfam RabGAP-TBC UniProtKB/TrEMBL
  TLD UniProtKB/TrEMBL
PROSITE TLDC UniProtKB/TrEMBL
SMART TBC UniProtKB/TrEMBL
  TLDc UniProtKB/TrEMBL
Superfamily-SCOP SSF47923 UniProtKB/TrEMBL
UniProt A0A2R9CDB4 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9CNR8 ENTREZGENE, UniProtKB/TrEMBL