HOXB1 (homeobox B1) - Rat Genome Database

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Gene: HOXB1 (homeobox B1) Pan paniscus
Analyze
Symbol: HOXB1
Name: homeobox B1
RGD ID: 11862404
Description: ENCODES a protein that exhibits DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); protein domain specific binding (ortholog); INVOLVED IN anatomical structure formation involved in morphogenesis (ortholog); anatomical structure morphogenesis (ortholog); anterior/posterior pattern specification (ortholog); ASSOCIATED WITH Craniofacial Abnormalities (ortholog); Hereditary Congenital Facial Paresis (ortholog); Hereditary Congenital Facial Paresis 3 (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: Homeobox protein Hox-B1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1179,190,137 - 9,191,696 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl179,190,137 - 9,191,696 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0179,005,745 - 9,008,230 (+)NCBIMhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
HOXB1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1179,190,137 - 9,191,696 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl179,190,137 - 9,191,696 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0179,005,745 - 9,008,230 (+)NCBIMhudiblu_PPA_v0panPan3
HOXB1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1748,528,526 - 48,531,011 (-)EnsemblGRCh38hg38GRCh38
GRCh381748,528,526 - 48,531,011 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371746,605,888 - 46,608,373 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361743,961,806 - 43,963,271 (-)NCBINCBI36hg18NCBI36
Build 341743,961,812 - 43,963,271NCBI
Celera1743,060,953 - 43,062,427 (-)NCBI
Cytogenetic Map17q21.32NCBI
HuRef1741,976,125 - 41,977,599 (-)NCBIHuRef
CHM1_11746,672,595 - 46,674,060 (-)NCBICHM1_1
Hoxb1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391196,256,572 - 96,259,080 (+)NCBIGRCm39mm39
GRCm39 Ensembl1196,256,578 - 96,259,082 (+)Ensembl
GRCm381196,365,746 - 96,368,254 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1196,365,752 - 96,368,256 (+)EnsemblGRCm38mm10GRCm38
MGSCv371196,227,072 - 96,229,567 (+)NCBIGRCm37mm9NCBIm37
MGSCv361196,181,848 - 96,183,766 (+)NCBImm8
Celera11106,016,588 - 106,019,083 (+)NCBICelera
Cytogenetic Map11DNCBI
cM Map1159.86NCBI
Hoxb1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21081,331,507 - 81,332,928 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1081,331,507 - 81,332,836 (+)Ensembl
Rnor_6.01084,214,358 - 84,215,812 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1084,214,358 - 84,215,687 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01084,017,011 - 84,018,433 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41085,098,903 - 85,100,308 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11085,102,648 - 85,114,602 (+)NCBI
Celera1080,097,554 - 80,099,008 (+)NCBICelera
Cytogenetic Map10q26NCBI
Hoxb1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545112,707,462 - 12,709,899 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545112,707,560 - 12,708,950 (+)NCBIChiLan1.0ChiLan1.0
HOXB1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1924,791,848 - 24,795,443 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl924,792,889 - 24,794,302 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha924,256,127 - 24,259,664 (-)NCBI
ROS_Cfam_1.0925,586,553 - 25,590,090 (-)NCBI
UMICH_Zoey_3.1924,354,782 - 24,358,319 (-)NCBI
UNSW_CanFamBas_1.0924,615,222 - 24,618,759 (-)NCBI
UU_Cfam_GSD_1.0924,743,539 - 24,747,076 (-)NCBI
Hoxb1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560224,218,714 - 24,222,497 (-)NCBI
SpeTri2.0NW_00493649012,853,983 - 12,855,428 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HOXB1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1224,784,953 - 24,786,377 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11224,784,953 - 24,786,377 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21224,742,328 - 24,743,755 (-)NCBISscrofa10.2Sscrofa10.2susScr3
HOXB1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11668,940,726 - 68,945,153 (-)NCBI
ChlSab1.1 Ensembl1668,941,746 - 68,943,111 (-)Ensembl
Vero_WHO_p1.0NW_02366607739,995,445 - 39,997,937 (-)NCBI
Hoxb1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247955,032,495 - 5,033,789 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000055355   ⟹   ENSPPAP00000032487
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl179,190,137 - 9,191,696 (+)Ensembl
RefSeq Acc Id: XM_003827498   ⟹   XP_003827546
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1179,190,137 - 9,191,696 (+)NCBI
Mhudiblu_PPA_v0179,005,745 - 9,008,230 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003827546 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein A1YG01 (Get FASTA)   NCBI Sequence Viewer  
  ABM54226 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_003827546   ⟸   XM_003827498
- Sequence:
RefSeq Acc Id: ENSPPAP00000032487   ⟸   ENSPPAT00000055355


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000039129 Ensembl, ENTREZGENE
Ensembl Protein ENSPPAP00000032487 ENTREZGENE
NCBI Gene HOXB1 ENTREZGENE
UniProt A1YG01 ENTREZGENE