GALNT13 (polypeptide N-acetylgalactosaminyltransferase 13) - Rat Genome Database

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Gene: GALNT13 (polypeptide N-acetylgalactosaminyltransferase 13) Pan paniscus
Analyze
Symbol: GALNT13
Name: polypeptide N-acetylgalactosaminyltransferase 13
RGD ID: 11861992
Description: ENCODES a protein that exhibits carbohydrate binding (inferred); glycosyltransferase activity (inferred); polypeptide N-acetylgalactosaminyltransferase activity (inferred); INVOLVED IN protein O-linked glycosylation (ortholog); ASSOCIATED WITH genetic disease (ortholog); Hepatomegaly (ortholog); FOUND IN Golgi apparatus (inferred); Golgi membrane (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 13 (GalNAc-T13)
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21356,013,558 - 57,122,029 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B56,420,858 - 57,137,008 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B41,220,041 - 41,720,654 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B158,254,616 - 158,970,023 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B158,420,534 - 158,966,732 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
GALNT13
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21356,013,558 - 57,122,029 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B56,420,858 - 57,137,008 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B41,220,041 - 41,720,654 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B158,254,616 - 158,970,023 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B158,420,534 - 158,966,732 (+)Ensemblpanpan1.1panPan2
GALNT13
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382153,068,293 - 154,456,574 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2153,337,705 - 153,357,422 (+)EnsemblGRCh38hg38GRCh38
GRCh38.p14 Ensembl2153,871,922 - 154,453,979 (+)EnsemblGRCh38hg38GRCh38
GRCh372154,728,435 - 155,310,689 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362154,436,672 - 155,018,735 (+)NCBINCBI36Build 36hg18NCBI36
Celera2148,342,630 - 148,924,907 (+)NCBICelera
Cytogenetic Map2q23.3NCBI
HuRef2146,614,742 - 147,197,572 (+)NCBIHuRef
CHM1_12154,734,347 - 155,316,367 (+)NCBICHM1_1
T2T-CHM13v2.02153,520,817 - 154,909,642 (+)NCBIT2T-CHM13v2.0
Galnt13
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39254,326,217 - 55,008,321 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl254,326,329 - 55,008,321 (+)EnsemblGRCm39 Ensembl
GRCm38254,436,211 - 55,118,309 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl254,436,317 - 55,118,309 (+)EnsemblGRCm38mm10GRCm38
MGSCv37254,288,798 - 54,970,155 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36254,251,773 - 54,933,130 (+)NCBIMGSCv36mm8
Celera256,207,641 - 56,879,923 (+)NCBICelera
Cytogenetic Map2C1.1NCBI
cM Map230.77NCBI
Galnt13
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8359,312,628 - 59,969,633 (+)NCBIGRCr8
mRatBN7.2338,903,695 - 39,560,683 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl338,974,490 - 39,558,803 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx342,323,978 - 42,915,414 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0350,908,809 - 51,500,243 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0348,693,629 - 49,285,129 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0339,967,056 - 40,625,144 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl340,038,336 - 40,624,530 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0345,059,017 - 45,711,493 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4336,065,457 - 36,657,842 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1335,961,828 - 36,554,210 (+)NCBI
Celera337,101,385 - 37,672,223 (+)NCBICelera
Cytogenetic Map3q12NCBI
Galnt13
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544018,993,694 - 19,426,410 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495544018,993,723 - 19,428,483 (+)NCBIChiLan1.0ChiLan1.0
GALNT13
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.136616,209 - 1,157,229 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl36616,080 - 1,153,700 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha36641,979 - 1,188,254 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.036621,995 - 1,166,863 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl36624,655 - 1,163,381 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.136628,056 - 1,177,243 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.036691,175 - 1,236,863 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.036704,947 - 1,281,541 (+)NCBIUU_Cfam_GSD_1.0
Galnt13
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303117,600,365 - 118,103,451 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493646923,512,250 - 23,987,274 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493646923,514,031 - 24,016,991 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GALNT13
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1561,440,656 - 62,047,336 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11561,440,625 - 62,045,229 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21569,038,007 - 69,107,768 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GALNT13
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11039,242,005 - 39,846,075 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1039,515,438 - 39,842,432 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040159,688,356 - 160,311,197 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Galnt13
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473211,588,347 - 12,097,650 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473211,583,286 - 12,175,101 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000046856   ⟹   ENSPPAP00000024031
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2B158,420,534 - 158,966,732 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000046862   ⟹   ENSPPAP00000024037
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2B158,420,534 - 158,966,732 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000046867   ⟹   ENSPPAP00000024042
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2B158,659,752 - 158,961,462 (+)Ensembl
RefSeq Acc Id: XM_055108591   ⟹   XP_054964566
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21356,542,944 - 57,118,739 (+)NCBI
NHGRI_mPanPan12B56,557,940 - 57,133,718 (+)NCBI
RefSeq Acc Id: XM_055108592   ⟹   XP_054964567
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21356,542,944 - 57,118,739 (+)NCBI
NHGRI_mPanPan12B56,557,940 - 57,133,718 (+)NCBI
RefSeq Acc Id: XM_055108593   ⟹   XP_054964568
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21356,405,839 - 57,118,739 (+)NCBI
NHGRI_mPanPan12B56,420,858 - 57,133,718 (+)NCBI
RefSeq Acc Id: XM_055108594   ⟹   XP_054964569
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21356,542,945 - 57,122,029 (+)NCBI
NHGRI_mPanPan12B56,557,940 - 57,137,008 (+)NCBI
RefSeq Acc Id: XM_055108595   ⟹   XP_054964570
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21356,542,943 - 57,118,739 (+)NCBI
NHGRI_mPanPan12B56,557,940 - 57,133,718 (+)NCBI
RefSeq Acc Id: XM_055108596   ⟹   XP_054964571
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21356,542,944 - 57,122,029 (+)NCBI
NHGRI_mPanPan12B56,557,940 - 57,137,008 (+)NCBI
RefSeq Acc Id: XM_057301416   ⟹   XP_057157399
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21356,542,945 - 57,122,029 (+)NCBI
NHGRI_mPanPan12B56,557,940 - 57,137,008 (+)NCBI
RefSeq Acc Id: XM_063595199   ⟹   XP_063451269
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21356,013,558 - 57,122,029 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: ENSPPAP00000024031   ⟸   ENSPPAT00000046856
RefSeq Acc Id: ENSPPAP00000024042   ⟸   ENSPPAT00000046867
RefSeq Acc Id: ENSPPAP00000024037   ⟸   ENSPPAT00000046862
RefSeq Acc Id: XP_054964568   ⟸   XM_055108593
- Peptide Label: isoform X1
- UniProtKB: A0A2R9B369 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054964569   ⟸   XM_055108594
- Peptide Label: isoform X2
- UniProtKB: A0A2R9B4U5 (UniProtKB/TrEMBL),   A0A2R9B369 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054964571   ⟸   XM_055108596
- Peptide Label: isoform X4
- UniProtKB: A0A2R9B363 (UniProtKB/TrEMBL),   A0A2R9B369 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054964566   ⟸   XM_055108591
- Peptide Label: isoform X1
- UniProtKB: A0A2R9B369 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054964570   ⟸   XM_055108595
- Peptide Label: isoform X3
- UniProtKB: A0A2R9B369 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054964567   ⟸   XM_055108592
- Peptide Label: isoform X1
- UniProtKB: A0A2R9B369 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_057157399   ⟸   XM_057301416
- Peptide Label: isoform X2
- UniProtKB: A0A2R9B4U5 (UniProtKB/TrEMBL),   A0A2R9B369 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063451269   ⟸   XM_063595199
- Peptide Label: isoform X2
Protein Domains
Ricin B lectin


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000035152 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000046856.1 UniProtKB/TrEMBL
  ENSPPAT00000046862.1 UniProtKB/TrEMBL
  ENSPPAT00000046867.1 UniProtKB/TrEMBL
Gene3D-CATH 2.80.10.50 UniProtKB/TrEMBL
InterPro GalNAc-T UniProtKB/TrEMBL
  Glyco_trans_2-like UniProtKB/TrEMBL
  Nucleotide-diphossugar_trans UniProtKB/TrEMBL
  Ricin_B-like_lectins UniProtKB/TrEMBL
  Ricin_B_lectin UniProtKB/TrEMBL
NCBI Gene GALNT13 ENTREZGENE
PANTHER N-ACETYLGALACTOSAMINYLTRANSFERASE UniProtKB/TrEMBL
  POLYPEPTIDE N-ACETYLGALACTOSAMINYLTRANSFERASE 13 UniProtKB/TrEMBL
Pfam Glycos_transf_2 UniProtKB/TrEMBL
  Ricin_B_lectin UniProtKB/TrEMBL
PROSITE RICIN_B_LECTIN UniProtKB/TrEMBL
SMART RICIN UniProtKB/TrEMBL
Superfamily-SCOP SSF50370 UniProtKB/TrEMBL
  SSF53448 UniProtKB/TrEMBL
UniProt A0A2R9B363 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9B369 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9B4U5 ENTREZGENE, UniProtKB/TrEMBL