SYT10 (synaptotagmin 10) - Rat Genome Database

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Gene: SYT10 (synaptotagmin 10) Pan paniscus
Analyze
Symbol: SYT10
Name: synaptotagmin 10
RGD ID: 11861969
Description: ENCODES a protein that exhibits identical protein binding (ortholog); phosphatidylinositol-4,5-bisphosphate binding (ortholog); protein heterodimerization activity (ortholog); INVOLVED IN chemical synaptic transmission (ortholog); positive regulation of calcium ion-dependent exocytosis (ortholog); presynaptic dense core vesicle exocytosis (ortholog); ASSOCIATED WITH genetic disease (ortholog); visual epilepsy (ortholog); FOUND IN glutamatergic synapse (ortholog); presynapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: synaptotagmin-10
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21063,284,958 - 63,358,857 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11263,286,586 - 63,355,247 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01252,761,294 - 52,830,221 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11255,364,858 - 55,429,298 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1255,364,714 - 55,429,298 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
SYT10
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21063,284,958 - 63,358,857 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11263,286,586 - 63,355,247 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01252,761,294 - 52,830,221 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11255,364,858 - 55,429,298 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1255,364,714 - 55,429,298 (+)Ensemblpanpan1.1panPan2
SYT10
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381233,374,238 - 33,439,819 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1233,374,238 - 33,439,819 (-)EnsemblGRCh38hg38GRCh38
GRCh371233,527,173 - 33,592,754 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361233,419,615 - 33,484,021 (-)NCBINCBI36Build 36hg18NCBI36
Build 341233,419,614 - 33,484,021NCBI
Celera1213,335,630 - 13,400,035 (-)NCBICelera
Cytogenetic Map12p11.1NCBI
HuRef1233,268,030 - 33,332,379 (-)NCBIHuRef
CHM1_11233,493,388 - 33,557,762 (-)NCBICHM1_1
T2T-CHM13v2.01233,245,435 - 33,311,036 (-)NCBIT2T-CHM13v2.0
Syt10
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391589,657,221 - 89,726,181 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1589,666,596 - 89,726,063 (-)EnsemblGRCm39 Ensembl
GRCm381589,773,714 - 89,841,980 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1589,782,393 - 89,841,860 (-)EnsemblGRCm38mm10GRCm38
MGSCv371589,612,824 - 89,672,291 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361589,610,160 - 89,669,536 (-)NCBIMGSCv36mm8
Celera1591,906,236 - 91,966,102 (-)NCBICelera
Cytogenetic Map15E3NCBI
cM Map1544.96NCBI
Syt10
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87122,737,301 - 122,800,462 (-)NCBIGRCr8
mRatBN7.27120,857,698 - 120,920,863 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7120,862,972 - 120,920,863 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7122,661,274 - 122,718,960 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07124,887,410 - 124,945,103 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07124,819,888 - 124,879,596 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07130,769,039 - 130,827,030 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7130,768,841 - 130,827,152 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07130,452,003 - 130,510,388 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47128,115,443 - 128,174,355 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17128,149,672 - 128,208,585 (-)NCBI
Celera7117,334,018 - 117,391,703 (-)NCBICelera
Cytogenetic Map7q34NCBI
Syt10
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555052,403,055 - 2,449,528 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555052,392,086 - 2,449,528 (+)NCBIChiLan1.0ChiLan1.0
SYT10
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12715,593,709 - 15,657,184 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2715,593,649 - 15,687,920 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2730,768,616 - 30,835,595 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02715,771,897 - 15,835,539 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2715,771,596 - 15,866,288 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12715,579,522 - 15,646,934 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02715,608,782 - 15,676,039 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02730,916,635 - 30,980,314 (-)NCBIUU_Cfam_GSD_1.0
Syt10
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494576,107,495 - 76,166,270 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366072,940,466 - 2,994,344 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366072,940,607 - 2,995,178 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SYT10
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl540,872,283 - 40,934,326 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1540,869,418 - 40,940,851 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2543,998,608 - 44,061,673 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SYT10
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11132,846,425 - 32,914,946 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1132,850,902 - 32,914,464 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660691,957,798 - 2,024,004 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Syt10
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247782,700,545 - 2,763,134 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003813722 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSPPAT00000065129   ⟹   ENSPPAP00000042199
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1255,364,714 - 55,429,298 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000065131   ⟹   ENSPPAP00000042201
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1255,365,217 - 55,380,740 (+)Ensembl
RefSeq Acc Id: XM_003813722   ⟹   XP_003813770
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21063,284,958 - 63,358,857 (+)NCBI
NHGRI_mPanPan11263,286,586 - 63,355,247 (+)NCBI
Mhudiblu_PPA_v01252,761,294 - 52,830,221 (+)NCBI
PanPan1.11255,364,858 - 55,429,298 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003813770 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000042199
  ENSPPAP00000042199.1
  ENSPPAP00000042201.1
Reference Protein Sequences
RefSeq Acc Id: XP_003813770   ⟸   XM_003813722
- UniProtKB: A0A2R9CJR8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSPPAP00000042199   ⟸   ENSPPAT00000065129
RefSeq Acc Id: ENSPPAP00000042201   ⟸   ENSPPAT00000065131
Protein Domains
C2


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000043684 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000065129.1 UniProtKB/TrEMBL
  ENSPPAT00000065131.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.150 UniProtKB/TrEMBL
InterPro C2_dom UniProtKB/TrEMBL
  C2_domain_sf UniProtKB/TrEMBL
  Synaptotagmin UniProtKB/TrEMBL
KEGG Report pps:100972126 UniProtKB/TrEMBL
NCBI Gene SYT10 ENTREZGENE
PANTHER PTHR10024:SF46 UniProtKB/TrEMBL
  SYNAPTOTAGMIN UniProtKB/TrEMBL
Pfam PF00168 UniProtKB/TrEMBL
PRINTS C2DOMAIN UniProtKB/TrEMBL
  SYNAPTOTAGMN UniProtKB/TrEMBL
PROSITE PS50004 UniProtKB/TrEMBL
SMART SM00239 UniProtKB/TrEMBL
Superfamily-SCOP SSF49562 UniProtKB/TrEMBL
UniProt A0A2R9CJR4_PANPA UniProtKB/TrEMBL
  A0A2R9CJR8 ENTREZGENE, UniProtKB/TrEMBL