TALDO1 (transaldolase 1) - Rat Genome Database

Name: TALDO1
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: TALDO1 (transaldolase 1) Pan paniscus

Analyze

Symbol:

TALDO1

Name:

transaldolase 1

RGD ID:

11860704

Description:

ENCODES a protein that exhibits carbohydrate binding (ortholog); identical protein binding (ortholog); monosaccharide binding (ortholog); INVOLVED IN fructose 6-phosphate metabolic process (ortholog); glyceraldehyde-3-phosphate metabolic process (ortholog); pentose-phosphate shunt (ortholog); PARTICIPATES IN pentose phosphate pathway; pentose phosphate pathway - non-oxidative phase; ribose 5-phosphate isomerase deficiency pathway; ASSOCIATED WITH carbohydrate metabolic disorder (ortholog); cataract (ortholog); Chanarin-Dorfman syndrome (ortholog); FOUND IN cytosol (ortholog); nucleus (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

transaldolase

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	TALDO1 (transaldolase 1)	NCBI	Ortholog
Mus musculus (house mouse):	Taldo1 (transaldolase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Taldo1 (transaldolase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Taldo1 (transaldolase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	TALDO1 (transaldolase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Taldo1 (transaldolase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	TALDO1 (transaldolase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	TALDO1 (transaldolase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Taldo1 (transaldolase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	9	3,144,559 - 3,162,555 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	11	2,354,981 - 2,372,634 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	764,864 - 782,548 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	11	809,751 - 826,744 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	11	809,751 - 826,744 (+)	Ensembl	panpan1.1		panPan2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

carbohydrate metabolic disorder (ISO)

cataract (ISO)

Chanarin-Dorfman syndrome (ISO)

Chemical and Drug Induced Liver Injury (ISO)

delta beta-thalassemia (ISO)

developmental and epileptic encephalopathy (ISO)

early infantile epileptic encephalopathy (ISO)

genetic disease (ISO)

hepatocellular carcinoma (ISO)

immunodeficiency 39 (ISO)

neuronal ceroid lipofuscinosis (ISO)

Parkinson's disease (ISO)

Segawa Syndrome, Autosomal Recessive (ISO)

Transaldolase Deficiency (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

carbohydrate metabolic process (IEA)

fructose 6-phosphate metabolic process (ISO)

glyceraldehyde-3-phosphate metabolic process (ISO)

pentose-phosphate shunt (IEA,ISO)

pentose-phosphate shunt, non-oxidative branch (IEA,ISO)

Cellular Component

cytoplasm (IEA)

cytosol (IEA,ISO)

nucleus (ISO)

Molecular Function

carbohydrate binding (ISO)

identical protein binding (ISO)

monosaccharide binding (ISO)

protein binding (ISO)

transaldolase activity (IEA,ISO)

transferase activity (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

pentose phosphate pathway (ISO)

pentose phosphate pathway - non-oxidative phase (ISO)

ribose 5-phosphate isomerase deficiency pathway (ISO)

transaldolase deficiency pathway (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

TALDO1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	9	3,144,559 - 3,162,555 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	11	2,354,981 - 2,372,634 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	764,864 - 782,548 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	11	809,751 - 826,744 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	11	809,751 - 826,744 (+)	Ensembl	panpan1.1		panPan2

TALDO1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	11	747,464 - 765,012 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	11	747,415 - 765,012 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	11	747,464 - 765,012 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	737,432 - 755,024 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	11	737,431 - 755,023	NCBI
Celera	11	815,308 - 828,130 (+)	NCBI		Celera
Cytogenetic Map	11	p15.5	NCBI
HuRef	11	564,412 - 581,950 (+)	NCBI		HuRef
CHM1_1	11	746,369 - 763,851 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	11	798,942 - 816,524 (+)	NCBI		T2T-CHM13v2.0

Taldo1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	140,972,073 - 140,982,889 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	140,972,112 - 140,982,881 (+)	Ensembl		GRCm39 Ensembl
GRCm38	7	141,392,160 - 141,402,976 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	141,392,199 - 141,402,968 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	7	148,578,059 - 148,588,875 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	7	141,243,531 - 141,254,288 (+)	NCBI		MGSCv36	mm8
Celera	7	141,185,913 - 141,196,721 (+)	NCBI		Celera
Cytogenetic Map	7	F5	NCBI
cM Map	7	86.73	NCBI

Taldo1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	205,923,196 - 205,933,526 (+)	NCBI		GRCr8
mRatBN7.2	1	196,493,634 - 196,503,965 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	196,493,589 - 196,503,974 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	204,839,159 - 204,849,489 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	211,967,918 - 211,978,015 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	204,642,055 - 204,652,153 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	214,375,555 - 214,385,886 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	214,375,515 - 214,385,885 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	221,292,669 - 221,302,999 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	201,582,856 - 201,593,187 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	201,737,566 - 201,747,896 (+)	NCBI
Celera	1	194,127,362 - 194,137,466 (+)	NCBI		Celera
Cytogenetic Map	1	q41	NCBI

Taldo1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955476	11,356,603 - 11,364,259 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955476	11,356,601 - 11,364,573 (-)	NCBI	ChiLan1.0	ChiLan1.0

TALDO1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	18	25,764,138 - 25,772,043 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	18	25,436,609 - 25,444,516 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	18	26,372,292 - 26,380,192 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	18	26,372,286 - 26,380,960 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	18	25,881,807 - 25,889,713 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	18	25,526,824 - 25,534,713 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	18	26,139,191 - 26,147,099 (+)	NCBI		UU_Cfam_GSD_1.0

Taldo1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	530,997 - 540,150 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936888	531,020 - 540,820 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936888	531,002 - 540,194 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TALDO1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	464,728 - 472,835 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	464,781 - 472,836 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	201,532 - 227,228 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TALDO1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	553,475 - 569,935 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	1	553,458 - 573,546 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666038	97,616,675 - 97,643,928 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Taldo1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624766	21,758,821 - 21,766,027 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624766	21,758,821 - 21,766,052 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003805077	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JARIFH020000009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSPPAT00000042877 ⟹ ENSPPAP00000020091

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	11	809,751 - 826,744 (+)	Ensembl

RefSeq Acc Id:

ENSPPAT00000042884 ⟹ ENSPPAP00000020098

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	11	809,899 - 814,725 (+)	Ensembl

RefSeq Acc Id:

XM_003805077 ⟹ XP_003805125

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	9	3,144,559 - 3,162,555 (+)	NCBI
NHGRI_mPanPan1	11	2,354,981 - 2,372,634 (+)	NCBI
Mhudiblu_PPA_v0	11	764,864 - 782,548 (+)	NCBI
PanPan1.1	11	809,751 - 826,744 (+)	NCBI

Sequence:

show sequence

CGGGGGCGGGGCTTCGTCCAGGCGCGCAGGGACCAGCGGGCCTCGCCCTCCCGCGCCGCTTTCC
GATTGGCAGCCGCCCGCGGGGCATTGTGGGCCGTCCGCGCGCCCGTCCCGTCGCCGCCGCCGCC
GCAGCCCCCTCGGTCTTGCTATGTCGAGCTCACCCGTGAAGCGTCAGAGGATGGAGTCCGCGCT
GGACCAGCTCAAGCAGTTCACCACCGTGGTGGCCGACACGGGCGACTTCCACGCCATCGACGAG
TACAAGCCCCAGGATGCTACCACCAACCCGTCCCTGATCTTGGCCGCAGCACAGATGCCCGCTT
ACCAGGAGCTGGTGGAGGAGGCGATCGCCTATGGCCGGAAGCTGGGCGGGTCACAAGAGGACCA
GATTAAAAATGCTATTGATAAACTTTTTGTGTTGTTTGGAGCAGAAATACTAAAGAAGATTCCG
GGCCGAGTATCCACAGAAGTAGATGCAAGGCTCTCCTTTGATAAAGATGCGATGGTGGCCAGAG
CCAGGCGGCTCATCGAGCTCTACAGGGAAGCTGGGATCAGCAAGGACCGAATTCTTATAAAGCT
GTCATCAACCTGGGAAGGAATTCAGGCTGGAAAGGATCTTGAGGAGCAGCACGGCATCCACTGC
AACATGACGTTACTCTTCTCCTTCGCCCAGGCTGTGGCCTGTGCCGAGGCGGGTGTGACCCTCA
TCTCCCCATTTGTTGGGCGCATCCTTGATTGGCATGTGGCAAACACCGACAAGAAATCCTATGA
GCCCCTGGAAGACCCTGGGGTAAAGAGTGTCACTAAAATCTACAACTACTACAAGAAGTTTAGC
TACAAAACCATTGTCATGGGCGCCTCCTTCCGCAACACGGGCGAGATCAAAGCACTGGCCGGCT
GTGACTTCCTCACCATCTCACCCAAGCTCCTGGGAGAGCTGCTGCAGGACAACGCCAAGCTGGT
GCCTGTGCTCTCAGCCAAGGCGGCCCAAGCCAGTGACCTGGAAAAAATCCACCTGGATGAGAAG
TCTTTCCGTTGGTTGCACAACGAGGACCAGATGGCTGTGGAGAAGCTCTCTGACGGGATCCGCA
AGTTTGCCGCTGATGCAGTGAAGCTGGAGCGGATGCTGACAGAACGAATGTTCAATGCAGAGAA
TGGAAAGTAGCGCATCCCTGAGGCTGGACTCCAGATCTGCACCGCTGGCCAGCTGGGATCTGAC
TGCACGTGGCTTCTGATGAATCTTGCGTTTTTTACAAATTGGAGCAGGGACAGATCATAGATTT
CTGATTTTATGTAAAATTTTGCCTAATGCATTAAAGCAGTCACTTTTCCTGTGCTGTTTCA

hide sequence

Protein Sequences


Protein RefSeqs	XP_003805125	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSPPAP00000020091.1
	ENSPPAP00000020098.1

RefSeq Acc Id:

XP_003805125 ⟸ XM_003805077

- Sequence:

show sequence

MSSSPVKRQRMESALDQLKQFTTVVADTGDFHAIDEYKPQDATTNPSLILAAAQMPAYQELVEE
AIAYGRKLGGSQEDQIKNAIDKLFVLFGAEILKKIPGRVSTEVDARLSFDKDAMVARARRLIEL
YREAGISKDRILIKLSSTWEGIQAGKDLEEQHGIHCNMTLLFSFAQAVACAEAGVTLISPFVGR
ILDWHVANTDKKSYEPLEDPGVKSVTKIYNYYKKFSYKTIVMGASFRNTGEIKALAGCDFLTIS
PKLLGELLQDNAKLVPVLSAKAAQASDLEKIHLDEKSFRWLHNEDQMAVEKLSDGIRKFAADAV
KLERMLTERMFNAENGK

hide sequence

RefSeq Acc Id:

ENSPPAP00000020091 ⟸ ENSPPAT00000042877

RefSeq Acc Id:

ENSPPAP00000020098 ⟸ ENSPPAT00000042884

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSPPAG00000033253	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSPPAT00000042877.1	UniProtKB/TrEMBL
	ENSPPAT00000042884.1	UniProtKB/TrEMBL
Gene3D-CATH	3.20.20.70	UniProtKB/TrEMBL
InterPro	Aldolase_TIM	UniProtKB/TrEMBL
	TAL/FSA	UniProtKB/TrEMBL
	Transaldolase_1	UniProtKB/TrEMBL
	Transaldolase_AS	UniProtKB/TrEMBL
KEGG Report	pps:100994858	UniProtKB/TrEMBL
NCBI Gene	TALDO1	ENTREZGENE
PANTHER	PTHR10683	UniProtKB/TrEMBL
	PTHR10683:SF18	UniProtKB/TrEMBL
Pfam	TAL_FSA	UniProtKB/TrEMBL
PROSITE	TRANSALDOLASE_1	UniProtKB/TrEMBL
	TRANSALDOLASE_2	UniProtKB/TrEMBL
Superfamily-SCOP	Aldolase	UniProtKB/TrEMBL
UniProt	A0A2R9ARX4_PANPA	UniProtKB/TrEMBL
	A0A2R9ASD6_PANPA	UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

RGD Manual Annotations

Imported Annotations - SMPDB

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Imported Disease Annotations - ClinVar

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