PUM3 (pumilio RNA binding family member 3) - Rat Genome Database

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Gene: PUM3 (pumilio RNA binding family member 3) Pan paniscus
Analyze
Symbol: PUM3
Name: pumilio RNA binding family member 3
RGD ID: 11860128
Description: ENCODES a protein that exhibits mRNA binding (inferred); RNA binding (inferred); INVOLVED IN regulation of translation (inferred); ASSOCIATED WITH chromosome 9p deletion syndrome (ortholog); genetic disease (ortholog); FOUND IN chromosome (inferred); endoplasmic reticulum (inferred); nucleolus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: pumilio domain-containing protein KIAA0020 homolog; pumilio homolog 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v211121,742,941 - 121,785,274 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan19121,748,884 - 121,791,218 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v092,606,386 - 2,645,943 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.192,797,964 - 2,837,399 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl92,797,969 - 2,837,321 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
PUM3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v211121,742,941 - 121,785,274 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan19121,748,884 - 121,791,218 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v092,606,386 - 2,645,943 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.192,797,964 - 2,837,399 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl92,797,969 - 2,837,321 (-)Ensemblpanpan1.1panPan2
PUM3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3892,804,152 - 2,844,095 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl92,720,469 - 2,844,095 (-)EnsemblGRCh38hg38GRCh38
GRCh3792,804,152 - 2,844,095 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3692,794,152 - 2,834,130 (-)NCBINCBI36Build 36hg18NCBI36
Build 3492,794,163 - 2,828,505NCBI
Celera92,722,408 - 2,762,387 (-)NCBICelera
Cytogenetic Map9p24.2NCBI
HuRef92,759,220 - 2,799,199 (-)NCBIHuRef
CHM1_192,804,479 - 2,844,443 (-)NCBICHM1_1
T2T-CHM13v2.092,807,740 - 2,847,894 (-)NCBIT2T-CHM13v2.0
Pum3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391927,366,105 - 27,407,264 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1927,366,098 - 27,407,225 (-)EnsemblGRCm39 Ensembl
GRCm381927,388,698 - 27,429,908 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1927,388,698 - 27,429,825 (-)EnsemblGRCm38mm10GRCm38
MGSCv371927,463,192 - 27,504,310 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361927,456,980 - 27,496,919 (-)NCBIMGSCv36mm8
Celera1928,172,798 - 28,213,903 (-)NCBICelera
Cytogenetic Map19C1NCBI
cM Map1921.96NCBI
Pum3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81234,483,482 - 234,527,718 (-)NCBIGRCr8
mRatBN7.21225,074,332 - 225,113,995 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1225,074,333 - 225,114,025 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1233,480,657 - 233,520,350 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01240,410,777 - 240,450,470 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01233,231,506 - 233,271,200 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01245,476,400 - 245,517,081 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1245,476,529 - 245,514,252 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01252,719,064 - 252,763,821 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41230,911,438 - 230,951,099 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1222,249,359 - 222,289,062 (-)NCBICelera
Cytogenetic Map1q52NCBI
Pum3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554347,198,558 - 7,245,324 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554347,208,319 - 7,245,324 (-)NCBIChiLan1.0ChiLan1.0
PUM3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1191,391,619 - 91,436,378 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl191,391,627 - 91,436,310 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha191,859,463 - 91,898,703 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0191,937,938 - 91,977,212 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl191,937,941 - 91,982,635 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1191,583,552 - 91,623,040 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0191,295,645 - 91,334,897 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0192,070,321 - 92,109,573 (-)NCBIUU_Cfam_GSD_1.0
Pum3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947138,927,317 - 138,973,299 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365032,199,637 - 2,237,178 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365032,199,766 - 2,237,171 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PUM3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1218,994,200 - 219,038,506 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11218,994,139 - 219,038,208 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21244,815,651 - 244,861,526 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PUM3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11276,708,246 - 76,749,520 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1276,714,791 - 76,750,847 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603865,048,070 - 65,089,360 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pum3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247367,501,432 - 7,536,990 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000060082   ⟹   ENSPPAP00000037183
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl92,797,969 - 2,837,321 (-)Ensembl
RefSeq Acc Id: XM_008976992   ⟹   XP_008975240
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v211121,742,941 - 121,785,274 (+)NCBI
NHGRI_mPanPan19121,748,884 - 121,791,218 (+)NCBI
Mhudiblu_PPA_v092,606,386 - 2,645,943 (-)NCBI
PanPan1.192,797,964 - 2,837,399 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008976993   ⟹   XP_008975241
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v211121,745,799 - 121,785,274 (+)NCBI
NHGRI_mPanPan19121,751,760 - 121,791,218 (+)NCBI
Mhudiblu_PPA_v092,606,386 - 2,645,812 (-)NCBI
PanPan1.192,797,964 - 2,837,321 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_008975240 (Get FASTA)   NCBI Sequence Viewer  
  XP_008975241 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000037183
  ENSPPAP00000037183.1
Reference Protein Sequences
RefSeq Acc Id: XP_008975240   ⟸   XM_008976992
- UniProtKB: A0A2R9C8C0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008975241   ⟸   XM_008976993
- UniProtKB: A0A2R9C8C0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSPPAP00000037183   ⟸   ENSPPAT00000060082
Protein Domains
PUM-HD


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000041337 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000060082.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.10.10 UniProtKB/TrEMBL
InterPro ARM-like UniProtKB/TrEMBL
  ARM-type_fold UniProtKB/TrEMBL
  CPL_dom UniProtKB/TrEMBL
  PUM-HD UniProtKB/TrEMBL
  PUM3 UniProtKB/TrEMBL
  Pumilio_RNA-bd_rpt UniProtKB/TrEMBL
KEGG Report pps:100973103 UniProtKB/TrEMBL
NCBI Gene PUM3 ENTREZGENE
PANTHER PTHR13389 UniProtKB/TrEMBL
  PUMILIO HOMOLOG 3 UniProtKB/TrEMBL
Pfam CPL UniProtKB/TrEMBL
PROSITE PUM UniProtKB/TrEMBL
  PUM_HD UniProtKB/TrEMBL
SMART Pumilio UniProtKB/TrEMBL
Superfamily-SCOP SSF48371 UniProtKB/TrEMBL
UniProt A0A2R9C8C0 ENTREZGENE, UniProtKB/TrEMBL