NMRK1 (nicotinamide riboside kinase 1) - Rat Genome Database

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Gene: NMRK1 (nicotinamide riboside kinase 1) Pan paniscus
Analyze
Symbol: NMRK1
Name: nicotinamide riboside kinase 1
RGD ID: 11859661
Description: ENCODES a protein that exhibits ribosylnicotinamide kinase activity (ortholog); ribosylnicotinate kinase activity (ortholog); INVOLVED IN nucleotide metabolic process (inferred); PARTICIPATES IN niacin metabolic pathway; nicotinamide adenine dinucleotide biosynthesis, the salvage pathway
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21174,230,354 - 74,257,585 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1974,235,676 - 74,263,460 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0949,746,075 - 49,773,245 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1973,917,674 - 73,945,304 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl973,917,674 - 73,945,304 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
NMRK1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21174,230,354 - 74,257,585 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1974,235,676 - 74,263,460 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0949,746,075 - 49,773,245 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1973,917,674 - 73,945,304 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl973,917,674 - 73,945,304 (-)Ensemblpanpan1.1panPan2
NMRK1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38975,060,577 - 75,088,155 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl975,060,573 - 75,088,217 (-)EnsemblGRCh38hg38GRCh38
GRCh37977,675,493 - 77,703,071 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36976,865,936 - 76,892,918 (-)NCBINCBI36Build 36hg18NCBI36
Build 34974,905,669 - 74,932,652NCBI
Celera948,253,604 - 48,280,619 (-)NCBICelera
Cytogenetic Map9q21.13NCBI
HuRef947,503,001 - 47,530,017 (-)NCBIHuRef
CHM1_1977,822,558 - 77,849,575 (-)NCBICHM1_1
T2T-CHM13v2.0987,217,117 - 87,244,685 (-)NCBIT2T-CHM13v2.0
Nmrk1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391918,609,380 - 18,629,555 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1918,609,314 - 18,629,792 (+)EnsemblGRCm39 Ensembl
GRCm381918,632,016 - 18,652,428 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1918,631,950 - 18,652,428 (+)EnsemblGRCm38mm10GRCm38
MGSCv371918,706,506 - 18,726,681 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361918,699,035 - 18,719,210 (+)NCBIMGSCv36mm8
Celera1919,318,140 - 19,337,534 (+)NCBICelera
Cytogenetic Map19BNCBI
cM Map1913.17NCBI
Nmrk1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81225,475,975 - 225,503,414 (+)NCBIGRCr8
mRatBN7.21216,049,350 - 216,076,792 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1216,049,437 - 216,076,791 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1224,383,014 - 224,410,366 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01231,319,558 - 231,346,910 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01224,137,541 - 224,164,895 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01234,721,992 - 234,749,452 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1234,721,974 - 234,749,447 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01241,821,770 - 241,849,122 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41222,230,110 - 222,257,462 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1213,348,622 - 213,375,985 (+)NCBICelera
Cytogenetic Map1q51NCBI
Nmrk1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555123,994,486 - 4,013,227 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555123,990,706 - 4,043,334 (+)NCBIChiLan1.0ChiLan1.0
NMRK1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1183,140,816 - 83,163,292 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl183,140,554 - 83,162,374 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha183,605,205 - 83,627,573 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0183,590,778 - 83,613,235 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl183,591,182 - 83,615,907 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1183,342,733 - 83,365,088 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0183,060,870 - 83,083,239 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0183,821,297 - 83,843,869 (+)NCBIUU_Cfam_GSD_1.0
Nmrk1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947130,329,474 - 130,359,835 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493650310,815,017 - 10,838,566 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493650310,813,986 - 10,843,537 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NMRK1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1228,113,327 - 228,141,890 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11228,113,323 - 228,141,890 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21255,013,001 - 255,040,116 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NMRK1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11286,112,583 - 86,140,457 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1286,112,271 - 86,140,449 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603874,556,464 - 74,584,391 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nmrk1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248112,670,520 - 2,682,133 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248112,670,268 - 2,686,302 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSPPAT00000042539   ⟹   ENSPPAP00000019763
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl973,917,674 - 73,945,304 (-)Ensembl
Ensembl Acc Id: ENSPPAT00000042546   ⟹   ENSPPAP00000019770
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl973,918,291 - 73,945,304 (-)Ensembl
Ensembl Acc Id: ENSPPAT00000042551   ⟹   ENSPPAP00000019775
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl973,923,785 - 73,935,444 (-)Ensembl
RefSeq Acc Id: XM_003822186   ⟹   XP_003822234
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21174,230,354 - 74,257,585 (-)NCBI
NHGRI_mPanPan1974,235,676 - 74,263,460 (-)NCBI
Mhudiblu_PPA_v0949,746,080 - 49,773,245 (+)NCBI
PanPan1.1973,918,291 - 73,945,304 (-)NCBI
Sequence:
RefSeq Acc Id: XM_003822187   ⟹   XP_003822235
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21174,230,354 - 74,257,557 (-)NCBI
NHGRI_mPanPan1974,235,676 - 74,263,460 (-)NCBI
Mhudiblu_PPA_v0949,746,079 - 49,773,245 (+)NCBI
PanPan1.1973,917,674 - 73,945,304 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008975743   ⟹   XP_008973991
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21174,230,354 - 74,257,557 (-)NCBI
NHGRI_mPanPan1974,235,676 - 74,263,460 (-)NCBI
Mhudiblu_PPA_v0949,746,075 - 49,773,245 (+)NCBI
PanPan1.1973,918,291 - 73,945,304 (-)NCBI
Sequence:
RefSeq Acc Id: XM_055091904   ⟹   XP_054947879
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21174,230,354 - 74,257,557 (-)NCBI
NHGRI_mPanPan1974,235,676 - 74,263,460 (-)NCBI
Protein Sequences
Protein RefSeqs XP_003822234 (Get FASTA)   NCBI Sequence Viewer  
  XP_003822235 (Get FASTA)   NCBI Sequence Viewer  
  XP_008973991 (Get FASTA)   NCBI Sequence Viewer  
  XP_054947879 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000019763.1
  ENSPPAP00000019770.1
  ENSPPAP00000019775.1
RefSeq Acc Id: XP_003822235   ⟸   XM_003822187
- Peptide Label: isoform X2
- UniProtKB: A0A2R9ARG6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003822234   ⟸   XM_003822186
- Peptide Label: isoform X1
- UniProtKB: A0A2R9AVF8 (UniProtKB/TrEMBL),   A0A2R9AVG3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008973991   ⟸   XM_008975743
- Peptide Label: isoform X1
- UniProtKB: A0A2R9AVF8 (UniProtKB/TrEMBL),   A0A2R9AVG3 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSPPAP00000019763   ⟸   ENSPPAT00000042539
Ensembl Acc Id: ENSPPAP00000019770   ⟸   ENSPPAT00000042546
Ensembl Acc Id: ENSPPAP00000019775   ⟸   ENSPPAT00000042551
RefSeq Acc Id: XP_054947879   ⟸   XM_055091904
- Peptide Label: isoform X2
- UniProtKB: A0A2R9ARG6 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000033100 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000042539.1 UniProtKB/TrEMBL
  ENSPPAT00000042546.1 UniProtKB/TrEMBL
  ENSPPAT00000042551.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
InterPro P-loop_NTPase UniProtKB/TrEMBL
KEGG Report pps:100992224 UniProtKB/TrEMBL
NCBI Gene NMRK1 ENTREZGENE
PANTHER URIDINE KINASE UniProtKB/TrEMBL
Pfam AAA_18 UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A2R9ARG6 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9AVF8 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9AVG3 ENTREZGENE, UniProtKB/TrEMBL