STRN4 (striatin 4) - Rat Genome Database
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Gene: STRN4 (striatin 4) Pan paniscus
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Symbol: STRN4
Name: striatin 4
RGD ID: 11859443
Description: ENCODES a protein that exhibits armadillo repeat domain binding (ortholog); protein domain specific binding (ortholog); protein phosphatase 2A binding (ortholog); ASSOCIATED WITH autosomal recessive limb-girdle muscular dystrophy type 2I (ortholog); Walker-Warburg syndrome (ortholog); FOUND IN dendritic spine (ortholog); FAR/SIN/STRIPAK complex (ortholog); protein-containing complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: striatin-4
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11952,240,880 - 52,260,241 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1952,240,880 - 52,260,241 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01943,711,834 - 43,738,742 (-)NCBIMhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
STRN4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11952,240,880 - 52,260,241 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1952,240,880 - 52,260,241 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01943,711,834 - 43,738,742 (-)NCBIMhudiblu_PPA_v0panPan3
STRN4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1946,719,511 - 46,746,994 (-)EnsemblGRCh38hg38GRCh38
GRCh381946,719,509 - 46,746,475 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371947,222,768 - 47,249,707 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361951,914,608 - 51,941,560 (-)NCBINCBI36hg18NCBI36
Build 341951,914,609 - 51,941,527NCBI
Celera1944,026,298 - 44,053,250 (-)NCBI
Cytogenetic Map19q13.32NCBI
HuRef1943,647,696 - 43,674,467 (-)NCBIHuRef
CHM1_11947,224,668 - 47,251,617 (-)NCBICHM1_1
Strn4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39716,549,814 - 16,574,856 (+)NCBIGRCm39mm39
GRCm39 Ensembl716,549,814 - 16,574,856 (+)Ensembl
GRCm38716,815,889 - 16,840,931 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl716,815,889 - 16,840,931 (+)EnsemblGRCm38mm10GRCm38
MGSCv37717,401,238 - 17,426,280 (+)NCBIGRCm37mm9NCBIm37
MGSCv36715,974,411 - 15,999,425 (+)NCBImm8
Celera714,013,892 - 14,038,921 (+)NCBICelera
Cytogenetic Map7A2NCBI
Strn4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2177,482,267 - 77,511,862 (+)NCBI
Rnor_6.0 Ensembl178,735,678 - 78,765,692 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0178,739,930 - 78,765,696 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0179,983,369 - 80,012,891 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4177,140,308 - 77,166,074 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1177,218,418 - 77,244,183 (+)NCBI
Celera171,971,158 - 71,996,922 (+)NCBICelera
Cytogenetic Map1q21NCBI
Strn4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955574752,848 - 771,666 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955574752,848 - 771,664 (-)NCBIChiLan1.0ChiLan1.0
STRN4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl1109,176,983 - 109,202,591 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.11109,176,955 - 109,203,875 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Strn4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_004936664553,682 - 574,240 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
STRN4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl652,601,934 - 52,627,902 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1652,601,934 - 52,627,910 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2647,922,599 - 47,948,577 (-)NCBISscrofa10.2Sscrofa10.2susScr3
STRN4
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1640,073,924 - 40,100,822 (-)NCBI
ChlSab1.1 Ensembl640,075,007 - 40,100,885 (-)Ensembl
Strn4
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248326,858,107 - 6,883,514 (+)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000048384   ⟹   ENSPPAP00000025556
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1952,240,880 - 52,260,241 (-)Ensembl
RefSeq Acc Id: XM_034946208   ⟹   XP_034802099
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v01943,711,834 - 43,738,742 (-)NCBI
RefSeq Acc Id: XM_034946209   ⟹   XP_034802100
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v01943,711,834 - 43,738,742 (-)NCBI
Protein Sequences
Protein RefSeqs XP_034802099 (Get FASTA)   NCBI Sequence Viewer  
  XP_034802100 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_034802100   ⟸   XM_034946209
- Peptide Label: isoform X2
RefSeq Acc Id: XP_034802099   ⟸   XM_034946208
- Peptide Label: isoform X1
RefSeq Acc Id: ENSPPAP00000025556   ⟸   ENSPPAT00000048384
Protein Domains
WD_REPEATS_REGION


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000035898 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSPPAP00000025556 UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000048384 UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.10 UniProtKB/TrEMBL
InterPro G-protein_beta_WD-40_rep UniProtKB/TrEMBL
  Striatin_N UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom_sf UniProtKB/TrEMBL
  WD40_repeat UniProtKB/TrEMBL
  WD40_repeat_CS UniProtKB/TrEMBL
  WD40_repeat_dom UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/TrEMBL
NCBI Gene STRN4 ENTREZGENE
Pfam Striatin UniProtKB/TrEMBL
  WD40 UniProtKB/TrEMBL
PRINTS GPROTEINBRPT UniProtKB/TrEMBL
PROSITE WD_REPEATS_1 UniProtKB/TrEMBL
  WD_REPEATS_2 UniProtKB/TrEMBL
  WD_REPEATS_REGION UniProtKB/TrEMBL
SMART WD40 UniProtKB/TrEMBL
Superfamily-SCOP SSF50978 UniProtKB/TrEMBL
UniProt A0A2R9B8Z0_PANPA UniProtKB/TrEMBL