LINS1 (lines homolog 1) - Rat Genome Database

Name: LINS1
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: LINS1 (lines homolog 1) Pan paniscus

Analyze

Symbol:

LINS1

Name:

lines homolog 1

RGD ID:

11858729

Description:

INVOLVED IN cognition (inferred); ASSOCIATED WITH autosomal recessive intellectual developmental disorder 27 (ortholog); chromosome 15q26-qter deletion syndrome (ortholog); genetic disease (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

LINS; protein Lines homolog

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	LINS1 (lines homolog 1)	NCBI	Ortholog
Mus musculus (house mouse):	Lins1 (lines homolog 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Lins1 (lines homolog 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Lins1 (lines homolog 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	LINS1 (lines homolog 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	LINS1 (lines homolog 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	LINS1 (lines homolog 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Lins1 (lines homolog 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	16	90,160,094 - 90,194,720 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	15	93,859,699 - 93,895,045 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	15	79,293,426 - 79,328,691 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	15	98,583,906 - 98,616,407 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	15	98,583,906 - 98,616,407 (-)	Ensembl	panpan1.1		panPan2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autosomal recessive intellectual developmental disorder 27 (ISO)

chromosome 15q26-qter deletion syndrome (ISO)

genetic disease (ISO)

intellectual disability (ISO)

microcephaly (ISO)

Neurodevelopmental Disorders (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cognition (IEA)

References

Genomics

Comparative Map Data

LINS1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	16	90,160,094 - 90,194,720 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	15	93,859,699 - 93,895,045 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	15	79,293,426 - 79,328,691 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	15	98,583,906 - 98,616,407 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	15	98,583,906 - 98,616,407 (-)	Ensembl	panpan1.1		panPan2

LINS1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	15	100,566,924 - 100,602,184 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	15	100,559,369 - 100,603,230 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	15	101,107,129 - 101,142,389 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	15	98,926,958 - 98,959,927 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	15	77,522,681 - 77,555,652 (-)	NCBI		Celera
Cytogenetic Map	15	q26.3	NCBI
HuRef	15	77,231,194 - 77,263,814 (-)	NCBI		HuRef
CHM1_1	15	100,949,360 - 100,983,431 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	15	98,321,577 - 98,357,861 (-)	NCBI		T2T-CHM13v2.0

Lins1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	66,339,565 - 66,367,004 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	66,339,637 - 66,367,004 (+)	Ensembl		GRCm39 Ensembl
GRCm38	7	66,689,817 - 66,717,256 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	66,689,889 - 66,717,256 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	7	73,852,990 - 73,859,542 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	7	66,587,054 - 66,593,606 (+)	NCBI		MGSCv36	mm8
Celera	7	64,161,477 - 64,168,020 (+)	NCBI		Celera
Cytogenetic Map	7	C	NCBI
cM Map	7	36.08	NCBI

Lins1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	129,677,815 - 129,705,399 (+)	NCBI		GRCr8
mRatBN7.2	1	120,267,586 - 120,295,013 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	120,267,693 - 120,293,607 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	128,265,667 - 128,291,649 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	135,437,099 - 135,463,081 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	128,241,271 - 128,267,234 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	127,599,647 - 127,625,583 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	127,604,197 - 127,625,577 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	128,674,717 - 128,701,711 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	121,162,852 - 121,169,099 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	121,241,784 - 121,247,350 (+)	NCBI
Celera	1	112,470,441 - 112,496,377 (+)	NCBI		Celera
Cytogenetic Map	1	q22	NCBI

Lins1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955416	27,586,257 - 27,595,117 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955416	27,585,172 - 27,609,780 (-)	NCBI	ChiLan1.0	ChiLan1.0

LINS1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	3	40,415,599 - 40,437,075 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	3	40,415,163 - 40,436,966 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	3	43,107,942 - 43,128,495 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	3	40,816,058 - 40,837,558 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	3	40,816,412 - 40,837,546 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	3	40,349,850 - 40,371,337 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	3	40,580,455 - 40,601,936 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	3	40,787,712 - 40,809,208 (+)	NCBI		UU_Cfam_GSD_1.0

LINS1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	139,168,785 - 139,191,163 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	139,168,859 - 139,191,238 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	155,373,215 - 155,395,580 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

LINS1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	29	19,036,427 - 19,065,361 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	29	19,036,305 - 19,044,244 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666059	27,478,584 - 27,507,513 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Lins1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624768	4,134,796 - 4,145,137 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624768	4,122,981 - 4,143,202 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003828430	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008953822	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008953823	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_024925694	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_055099021	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_055099022	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_055099023	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JARIFH020000016	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSPPAT00000064701 ⟹ ENSPPAP00000041775

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	15	98,583,906 - 98,616,407 (-)	Ensembl

RefSeq Acc Id:

ENSPPAT00000064703 ⟹ ENSPPAP00000041777

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	15	98,588,244 - 98,595,540 (-)	Ensembl

RefSeq Acc Id:

XM_003828430 ⟹ XP_003828478

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	16	90,160,094 - 90,194,720 (-)	NCBI
NHGRI_mPanPan1	15	93,859,699 - 93,895,045 (-)	NCBI
Mhudiblu_PPA_v0	15	79,293,426 - 79,328,691 (-)	NCBI
PanPan1.1	15	98,583,906 - 98,616,407 (-)	NCBI

Sequence:

show sequence

CTCTGCGCATGCGGGAGGAGGTGCCAGCTTGTACTTTCTGTGAACTACGGTGGCCCAGAGCGGG
CATTTGTGTTCCCTCAAATGGCGGTGTGAAGAGAGTTCGCCTGAGCCAGATCCCAGGTTTCACT
GAAGAAACGTCTTAGAGATTCATTGCACTTCTGAGATTTAATGTTTACAACTTGGAGTTGTCAA
CCTTCTTATAAGATACATTTTGGAAGTCAAAATGAAAGTTTTCTGTGAAGTTTTAGAAGAGTTA
TACAAGAAGGTACTTCTTGGAGCCACACTTGAAAATGACAGCCATGATTACATCTTTTATCTCA
ACCCAGCAGTTTCAGATCAAGATTGCTCTACAGCCACCTCCTTAGAATGGGCAAACACCTGTCG
TATCCAGGGCAGGCATCAGCCCATCTCTGTTGGTGTGGCTCCCATTGCTGTAGCACCTGTGTGT
TTGAAGACCAACTCTCAGATGAGCGGTTCCAGAGAAGTAATGCTCCTTCAGTTAACAGTGATCA
AAGTGATGACAACCCGGATATTGTCTGTCAAAACCGAGTTCCATGCAAAGGAGCAATACAGAGA
TGTAATTAAAATTCTCTTAGAATCAGCCAAAGTCGATTCTAAATTAATCTGCATGTTCCAAAAT
TCAGATAAATTGTTATCTCACATGGCTGCACAGTGCCTTGCATTGCTTCTATATTTCCAATTGA
GAGAAAAGATAACCTTAAGTAATTCCTGGATTGCTTTTTGCCAGAAAAATCTTTCTGAATGCTC
TGAGAGTAATAAAGCAATATACTGCCTCTGGACTCTTACAGCAATAATAAAAGAAATCTTTAAA
GATTCATGTTCACAGAAAACAGAAATTCTAAAGCAGTTCCTGACTCATTTCGACACCATTTTTG
AAGTGTTTTACAATTCCTTATTGTCTCAGCATTTTGAAAACTGCCGGGATACTTCTAAAATAGT
AAACATCCTGATGTGTTTCCTGGAGTTGCTTGAGCTTCTCATCGCCTCCAGAATCCACCTGAAG
TTACATTTCACTTGCCAGAGGATTTTATTTTTGAAACCATCTTGCATGCTAGAAGTTATTACCT
GGCCTATTCAGGCTTTTGTTAAAAGGAAGGTCATCATATTCCTCAAAAAGTGCCTTCTCTGTAA
AGTGGGTGAAGACCTCTGTCGTGGATCTGTGCCTGCCTTAATGCCGCCAGACCATCATGTAGCG
GTGGACATGCTGGCTTTAGCTAATGCTGTTTTGCAAGCTGTGAATTCGGGGTTGTTGAAGACAC
TGTCTGTTTATGAAAAACATTCCTTTTTTGGAGGCGATGAAGTTCAACCTGGATGTGAACATAT
CACTAGTCCAGATCATGTGATCCTTAGAGCAGCAAGCTTAGTTATAATGAAATCCTTAGAAATC
AAGTTTCAGAATTGTTCTTCAGCAAGTGAAATGAAAGTTGACTTACAGAGGTTCATGTCTGAGT
TACTGACCTTCTTAAAGCCTCATCTTCAGCCCTCTCTGCAATTACACAATCCGTGCAAATGGCT
GTCTCGGGTTTTCATAGAACAAGACGATGACATGCTGGAGGCTGCCAAGGCATCACTGGGCATC
TACTTAACACTGACCAGAGGATGTGAAGCCACTGAAAGCTTGACTCAGGGAAAAGAAATGTGGG
ACCATCACACACATGAAAATGGCTATAATCCTCACTGTATTTTCTTATTCTTCTTGAAAAATAT
AGGATTTGATTCCACAGTTCTTCTTGACTTTTTGATTTCATCAGAAACCTGTTTTCTTGAATAT
TTTGTTAGATATTTAAAATTACTGCAAAAGGACTGGGATAATTTTTTCACCATTTGCAATAACT
TTGATGCAACTGAATCTAAATATGACATAAGTATTTGTGGCTGTGTCCCCTCACTTGTCCAAGA
CCCAAGCACCAACCAAACAATACCCCATCGTTTGACTGCTCCTCATAGTCACAGAGATGTGTGT
GCTCGGCACTCCTGGGCTTCCGATGCTCCCTCTGAACCACTGAAAGCTGTGATGTCCAAGGGGG
CTCACACCATGTGTACTTCTAGTCTGTCTTCCCCCCGGGCCTCTCAAAGTCTGGTAGATTACGA
CAGCTCTGATGATTCTGATGTGGAATCCACAGACCAGTGTTTAGCTAACAGTAAACAGACATCT
TTACACCAGCAAGCAACTAAGGAGATTCAGGATGCAGCTGGGACAAGCAGGGATAAAAAAGAAT
TTAGCCTTGAGCCTCCATCAAGGCCTCTGGTTCTGAAAGAATTTGATACTGCCTTCTCCTTTGA
TTGTGAAGTAGCCCCAAATGATGTCGTCTCTGAAGTGGGAATATTTTACAGAATAGTAAAATGC
TTCCAGGAACTACAAGATGCCATCTGCCGTTTGCGAAAGAAAAATCTTTTCCCATATAATCCAA
CTGCACTTTTGAAGTTGTTAAAATACATAGAGGTGATAAGTAATAAAACTATGAACACTTTGTA
AAACATTGA

hide sequence

RefSeq Acc Id:

XM_008953822 ⟹ XP_008952070

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	16	90,160,094 - 90,178,744 (-)	NCBI
NHGRI_mPanPan1	15	93,859,699 - 93,879,064 (-)	NCBI
Mhudiblu_PPA_v0	15	79,294,753 - 79,312,789 (-)	NCBI
PanPan1.1	15	98,583,906 - 98,600,502 (-)	NCBI

Sequence:

show sequence

TTTTAACAAGGGAGGCATGAGACATCAATCAAGATATGTAAAATGAACATTGGTTCAGTCCAGA
AAGGTGGGACAACTCTTAAGCGGGGAGGGGGCTTCCAGGTCACAGGTTTCACTGAAGAAACGTC
TTAGAGATTCATTGCACTTCTGAGATTTAATGTTTACAACTTGGAGTTGTCAACCTTCTTATAA
GATACATTTTGGAAGTCAAAATGAAAGTTTTCTGTGAAGTTTTAGAAGAGTTATACAAGAAGGT
ACTTCTTGGAGCCACACTTGAAAATGACAGCCATGATTACATCTTTTATCTCAACCCAGCAGTT
TCAGATCAAGATTGCTCTACAGCCACCTCCTTAGAATGGGCAAACACCTGTCGTATCCAGGGCA
GGCATCAGCCCATCTCTGTTGGTGTGGCTCCCATTGCTGTAGCACCTGTGTGTTTGAAGACCAA
CTCTCAGATGAGCGGTTCCAGAGAAGTAATGCTCCTTCAGTTAACAGTGATCAAAGTGATGACA
ACCCGGATATTGTCTGTCAAAACCGAGTTCCATGCAAAGGAGCAATACAGAGATGTAATTAAAA
TTCTCTTAGAATCAGCCAAAGTCGATTCTAAATTAATCTGCATGTTCCAAAATTCAGATAAATT
GTTATCTCACATGGCTGCACAGTGCCTTGCATTGCTTCTATATTTCCAATTGAGAGAAAAGATA
ACCTTAAGTAATTCCTGGATTGCTTTTTGCCAGAAAAATCTTTCTGAATGCTCTGAGAGTAATA
AAGCAATATACTGCCTCTGGACTCTTACAGCAATAATAAAAGAAATCTTTAAAGATTCATGTTC
ACAGAAAACAGAAATTCTAAAGCAGTTCCTGACTCATTTCGACACCATTTTTGAAGTGTTTTAC
AATTCCTTATTGTCTCAGCATTTTGAAAACTGCCGGGATACTTCTAAAATAGTAAACATCCTGA
TGTGTTTCCTGGAGTTGCTTGAGCTTCTCATCGCCTCCAGAATCCACCTGAAGTTACATTTCAC
TTGCCAGAGGATTTTATTTTTGAAACCATCTTGCATGCTAGAAGTTATTACCTGGCCTATTCAG
GCTTTTGTTAAAAGGAAGGTCATCATATTCCTCAAAAAGTGCCTTCTCTGTAAAGTGGGTGAAG
ACCTCTGTCGTGGATCTGTGCCTGCCTTAATGCCGCCAGACCATCATGTAGCGGTGGACATGCT
GGCTTTAGCTAATGCTGTTTTGCAAGCTGTGAATTCGGGGTTGTTGAAGACACTGTCTGTTTAT
GAAAAACATTCCTTTTTTGGAGGCGATGAAGTTCAACCTGGATGTGAACATATCACTAGTCCAG
ATCATGTGATCCTTAGAGCAGCAAGCTTAGTTATAATGAAATCCTTAGAAATCAAGTTTCAGAA
TTGTTCTTCAGCAAGTGAAATGAAAGTTGACTTACAGAGGTTCATGTCTGAGTTACTGACCTTC
TTAAAGCCTCATCTTCAGCCCTCTCTGCAATTACACAATCCGTGCAAATGGCTGTCTCGGGTTT
TCATAGAACAAGACGATGACATGCTGGAGGCTGCCAAGGCATCACTGGGCATCTACTTAACACT
GACCAGAGGATGTGAAGCCACTGAAAGCTTGACTCAGGGAAAAGAAATGTGGGACCATCACACA
CATGAAAATGGCTATAATCCTCACTGTATTTTCTTATTCTTCTTGAAAAATATAGGATTTGATT
CCACAGTTCTTCTTGACTTTTTGATTTCATCAGAAACCTGTTTTCTTGAATATTTTGTTAGATA
TTTAAAATTACTGCAAAAGGACTGGGATAATTTTTTCACCATTTGCAATAACTTTGATGCAACT
GAATCTAAATATGACATAAGTATTTGTGGCTGTGTCCCCTCACTTGTCCAAGACCCAAGCACCA
ACCAAACAATACCCCATCGTTTGACTGCTCCTCATAGTCACAGAGATGTGTGTGCTCGGCACTC
CTGGGCTTCCGATGCTCCCTCTGAACCACTGAAAGCTGTGATGTCCAAGGGGGCTCACACCATG
TGTACTTCTAGTCTGTCTTCCCCCCGGGCCTCTCAAAGTCTGGTAGATTACGACAGCTCTGATG
ATTCTGATGTGGAATCCACAGACCAGTGTTTAGCTAACAGTAAACAGACATCTTTACACCAGCA
AGCAACTAAGGAGATTCAGGATGCAGCTGGGACAAGCAGGGATAAAAAAGAATTTAGCCTTGAG
CCTCCATCAAGGCCTCTGGTTCTGAAAGAATTTGATACTGCCTTCTCCTTTGATTGTGAAGTAG
CCCCAAATGATGTCGTCTCTGAAGTGGGAATATTTTACAGAATAGTAAAATGCTTCCAGGAACT
ACAAGATGCCATCTGCCGTTTGCGAAAGAAAAATCTTTTCCCATATAATCCAACTGCACTTTTG
AAGTTGTTAAAATACATAGAGGTGATAAGTAATAAAACTATGAACACTTTGTAAAACATTGA

hide sequence

RefSeq Acc Id:

XM_008953823 ⟹ XP_008952071

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	16	90,160,094 - 90,194,643 (-)	NCBI
NHGRI_mPanPan1	15	93,859,699 - 93,894,973 (-)	NCBI
Mhudiblu_PPA_v0	15	79,294,753 - 79,328,661 (-)	NCBI
PanPan1.1	15	98,583,906 - 98,616,351 (-)	NCBI

Sequence:

show sequence

AGAGCGGGCATTTGTGTTCCCTCAAATGGCGGTGTGAAGAGAGTTCGCCTGAGCCAGATCCCAG
GCAGGTTTCACTGAAGAAACGTCTTAGAGATTCATTGCACTTCTGAGATTTAATGTTTACAACT
TGGAGTTGTCAACCTTCTTATAAGATACATTTTGGAAGTCAAAATGAAAGTTTTCTGTGAAGTT
TTAGAAGAGTTATACAAGAAGGTACTTCTTGGAGCCACACTTGAAAATGACAGCCATGATTACA
TCTTTTATCTCAACCCAGCAGTTTCAGATCAAGATTGCTCTACAGCCACCTCCTTAGAATGGGC
AAACACCTGTCGTATCCAGGGCAGGCATCAGCCCATCTCTGTTGGTGTGGCTCCCATTGCTGTA
GCACCTGTGTGTTTGAAGACCAACTCTCAGATGAGCGGTTCCAGAGAAGTAATGCTCCTTCAGT
TAACAGTGATCAAAGTGATGACAACCCGGATATTGTCTGTCAAAACCGAGTTCCATGCAAAGGA
GCAATACAGAGATGTAATTAAAATTCTCTTAGAATCAGCCAAAGTCGATTCTAAATTAATCTGC
ATGTTCCAAAATTCAGATAAATTGTTATCTCACATGGCTGCACAGTGCCTTGCATTGCTTCTAT
ATTTCCAATTGAGAGAAAAGATAACCTTAAGTAATTCCTGGATTGCTTTTTGCCAGAAAAATCT
TTCTGAATGCTCTGAGAGTAATAAAGCAATATACTGCCTCTGGACTCTTACAGCAATAATAAAA
GAAATCTTTAAAGATTCATGTTCACAGAAAACAGAAATTCTAAAGCAGTTCCTGACTCATTTCG
ACACCATTTTTGAAGTGTTTTACAATTCCTTATTGTCTCAGCATTTTGAAAACTGCCGGGATAC
TTCTAAAATAGTAAACATCCTGATGTGTTTCCTGGAGTTGCTTGAGCTTCTCATCGCCTCCAGA
ATCCACCTGAAGTTACATTTCACTTGCCAGAGGATTTTATTTTTGAAACCATCTTGCATGCTAG
AAGTTATTACCTGGCCTATTCAGGCTTTTGTTAAAAGGAAGGTCATCATATTCCTCAAAAAGTG
CCTTCTCTGTAAAGTGGGTGAAGACCTCTGTCGTGGATCTGTGCCTGCCTTAATGCCGCCAGAC
CATCATGTAGCGGTGGACATGCTGGCTTTAGCTAATGCTGTTTTGCAAGCTGTGAATTCGGGGT
TGTTGAAGACACTGTCTGTTTATGAAAAACATTCCTTTTTTGGAGGCGATGAAGTTCAACCTGG
ATGTGAACATATCACTAGTCCAGATCATGTGATCCTTAGAGCAGCAAGCTTAGTTATAATGAAA
TCCTTAGAAATCAAGTTTCAGAATTGTTCTTCAGCAAGTGAAATGAAAGTTGACTTACAGAGGT
TCATGTCTGAGTTACTGACCTTCTTAAAGCCTCATCTTCAGCCCTCTCTGCAATTACACAATCC
GTGCAAATGGCTGTCTCGGGTTTTCATAGAACAAGACGATGACATGCTGGAGGCTGCCAAGGCA
TCACTGGGCATCTACTTAACACTGACCAGAGGATGTGAAGCCACTGAAAGCTTGACTCAGGGAA
AAGAAATGTGGGACCATCACACACATGAAAATGGCTATAATCCTCACTGTATTTTCTTATTCTT
CTTGAAAAATATAGGATTTGATTCCACAGTTCTTCTTGACTTTTTGATTTCATCAGAAACCTGT
TTTCTTGAATATTTTGTTAGATATTTAAAATTACTGCAAAAGGACTGGGATAATTTTTTCACCA
TTTGCAATAACTTTGATGCAACTGAATCTAAATATGACATAAGTATTTGTGGCTGTGTCCCCTC
ACTTGTCCAAGACCCAAGCACCAACCAAACAATACCCCATCGTTTGACTGCTCCTCATAGTCAC
AGAGATGTGTGTGCTCGGCACTCCTGGGCTTCCGATGCTCCCTCTGAACCACTGAAAGCTGTGA
TGTCCAAGGGGGCTCACACCATGTGTACTTCTAGTCTGTCTTCCCCCCGGGCCTCTCAAAGTCT
GGTAGATTACGACAGCTCTGATGATTCTGATGTGGAATCCACAGACCAGTGTTTAGCTAACAGT
AAACAGACATCTTTACACCAGCAAGCAACTAAGGAGATTCAGGATGCAGCTGGGACAAGCAGGG
ATAAAAAAGAATTTAGCCTTGAGCCTCCATCAAGGCCTCTGGTTCTGAAAGAATTTGATACTGC
CTTCTCCTTTGATTGTGAAGTAGCCCCAAATGATGTCGTCTCTGAAGTGGGAATATTTTACAGA
ATAGTAAAATGCTTCCAGGAACTACAAGATGCCATCTGCCGTTTGCGAAAGAAAAATCTTTTCC
CATATAATCCAACTGCACTTTTGAAGTTGTTAAAATACATAGAGGTGATAAGTAATAAAACTAT
GAACACTTTGTAAAACATTGA

hide sequence

RefSeq Acc Id:

XM_055099021 ⟹ XP_054954996

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	16	90,160,094 - 90,194,575 (-)	NCBI
NHGRI_mPanPan1	15	93,859,699 - 93,894,905 (-)	NCBI

RefSeq Acc Id:

XM_055099022 ⟹ XP_054954997

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	16	90,160,094 - 90,194,720 (-)	NCBI
NHGRI_mPanPan1	15	93,859,699 - 93,895,045 (-)	NCBI

RefSeq Acc Id:

XM_055099023 ⟹ XP_054954998

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	16	90,160,094 - 90,171,366 (-)	NCBI
NHGRI_mPanPan1	15	93,859,699 - 93,868,489 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_003828478	(Get FASTA)	NCBI Sequence Viewer
	XP_008952070	(Get FASTA)	NCBI Sequence Viewer
	XP_008952071	(Get FASTA)	NCBI Sequence Viewer
	XP_054954996	(Get FASTA)	NCBI Sequence Viewer
	XP_054954997	(Get FASTA)	NCBI Sequence Viewer
	XP_054954998	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSPPAP00000041775.1
	ENSPPAP00000041777.1

RefSeq Acc Id:

XP_003828478 ⟸ XM_003828430

- Peptide Label:

isoform X1

- Sequence:

show sequence

MKVFCEVLEELYKKVLLGATLENDSHDYIFYLNPAVSDQDCSTATSLEWANTCRIQGRHQPISV
GVAPIAVAPVCLKTNSQMSGSREVMLLQLTVIKVMTTRILSVKTEFHAKEQYRDVIKILLESAK
VDSKLICMFQNSDKLLSHMAAQCLALLLYFQLREKITLSNSWIAFCQKNLSECSESNKAIYCLW
TLTAIIKEIFKDSCSQKTEILKQFLTHFDTIFEVFYNSLLSQHFENCRDTSKIVNILMCFLELL
ELLIASRIHLKLHFTCQRILFLKPSCMLEVITWPIQAFVKRKVIIFLKKCLLCKVGEDLCRGSV
PALMPPDHHVAVDMLALANAVLQAVNSGLLKTLSVYEKHSFFGGDEVQPGCEHITSPDHVILRA
ASLVIMKSLEIKFQNCSSASEMKVDLQRFMSELLTFLKPHLQPSLQLHNPCKWLSRVFIEQDDD
MLEAAKASLGIYLTLTRGCEATESLTQGKEMWDHHTHENGYNPHCIFLFFLKNIGFDSTVLLDF
LISSETCFLEYFVRYLKLLQKDWDNFFTICNNFDATESKYDISICGCVPSLVQDPSTNQTIPHR
LTAPHSHRDVCARHSWASDAPSEPLKAVMSKGAHTMCTSSLSSPRASQSLVDYDSSDDSDVEST
DQCLANSKQTSLHQQATKEIQDAAGTSRDKKEFSLEPPSRPLVLKEFDTAFSFDCEVAPNDVVS
EVGIFYRIVKCFQELQDAICRLRKKNLFPYNPTALLKLLKYIEVISNKTMNTL

hide sequence

RefSeq Acc Id:

XP_008952071 ⟸ XM_008953823

- Peptide Label:

isoform X1

- Sequence:

show sequence

MKVFCEVLEELYKKVLLGATLENDSHDYIFYLNPAVSDQDCSTATSLEWANTCRIQGRHQPISV
GVAPIAVAPVCLKTNSQMSGSREVMLLQLTVIKVMTTRILSVKTEFHAKEQYRDVIKILLESAK
VDSKLICMFQNSDKLLSHMAAQCLALLLYFQLREKITLSNSWIAFCQKNLSECSESNKAIYCLW
TLTAIIKEIFKDSCSQKTEILKQFLTHFDTIFEVFYNSLLSQHFENCRDTSKIVNILMCFLELL
ELLIASRIHLKLHFTCQRILFLKPSCMLEVITWPIQAFVKRKVIIFLKKCLLCKVGEDLCRGSV
PALMPPDHHVAVDMLALANAVLQAVNSGLLKTLSVYEKHSFFGGDEVQPGCEHITSPDHVILRA
ASLVIMKSLEIKFQNCSSASEMKVDLQRFMSELLTFLKPHLQPSLQLHNPCKWLSRVFIEQDDD
MLEAAKASLGIYLTLTRGCEATESLTQGKEMWDHHTHENGYNPHCIFLFFLKNIGFDSTVLLDF
LISSETCFLEYFVRYLKLLQKDWDNFFTICNNFDATESKYDISICGCVPSLVQDPSTNQTIPHR
LTAPHSHRDVCARHSWASDAPSEPLKAVMSKGAHTMCTSSLSSPRASQSLVDYDSSDDSDVEST
DQCLANSKQTSLHQQATKEIQDAAGTSRDKKEFSLEPPSRPLVLKEFDTAFSFDCEVAPNDVVS
EVGIFYRIVKCFQELQDAICRLRKKNLFPYNPTALLKLLKYIEVISNKTMNTL

hide sequence

RefSeq Acc Id:

XP_008952070 ⟸ XM_008953822

- Peptide Label:

isoform X1

- Sequence:

show sequence

MKVFCEVLEELYKKVLLGATLENDSHDYIFYLNPAVSDQDCSTATSLEWANTCRIQGRHQPISV
GVAPIAVAPVCLKTNSQMSGSREVMLLQLTVIKVMTTRILSVKTEFHAKEQYRDVIKILLESAK
VDSKLICMFQNSDKLLSHMAAQCLALLLYFQLREKITLSNSWIAFCQKNLSECSESNKAIYCLW
TLTAIIKEIFKDSCSQKTEILKQFLTHFDTIFEVFYNSLLSQHFENCRDTSKIVNILMCFLELL
ELLIASRIHLKLHFTCQRILFLKPSCMLEVITWPIQAFVKRKVIIFLKKCLLCKVGEDLCRGSV
PALMPPDHHVAVDMLALANAVLQAVNSGLLKTLSVYEKHSFFGGDEVQPGCEHITSPDHVILRA
ASLVIMKSLEIKFQNCSSASEMKVDLQRFMSELLTFLKPHLQPSLQLHNPCKWLSRVFIEQDDD
MLEAAKASLGIYLTLTRGCEATESLTQGKEMWDHHTHENGYNPHCIFLFFLKNIGFDSTVLLDF
LISSETCFLEYFVRYLKLLQKDWDNFFTICNNFDATESKYDISICGCVPSLVQDPSTNQTIPHR
LTAPHSHRDVCARHSWASDAPSEPLKAVMSKGAHTMCTSSLSSPRASQSLVDYDSSDDSDVEST
DQCLANSKQTSLHQQATKEIQDAAGTSRDKKEFSLEPPSRPLVLKEFDTAFSFDCEVAPNDVVS
EVGIFYRIVKCFQELQDAICRLRKKNLFPYNPTALLKLLKYIEVISNKTMNTL

hide sequence

RefSeq Acc Id:

ENSPPAP00000041777 ⟸ ENSPPAT00000064703

RefSeq Acc Id:

ENSPPAP00000041775 ⟸ ENSPPAT00000064701

RefSeq Acc Id:	XP_054954997 ⟸ XM_055099022
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_054954996 ⟸ XM_055099021
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_054954998 ⟸ XM_055099023
- Peptide Label:	isoform X2

Protein Domains

Protein Lines C-terminal Protein Lines N-terminal

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSPPAG00000043486	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSPPAT00000064701.1	UniProtKB/TrEMBL
	ENSPPAT00000064703.1	UniProtKB/TrEMBL
InterPro	ARM-type_fold	UniProtKB/TrEMBL
	Lines_C	UniProtKB/TrEMBL
	LINES_N	UniProtKB/TrEMBL
	Protein_Lines	UniProtKB/TrEMBL
KEGG Report	pps:100995138	UniProtKB/TrEMBL
NCBI Gene	LINS1	ENTREZGENE
PANTHER	PROTEIN LINES HOMOLOG 1	UniProtKB/TrEMBL
	PTHR16057	UniProtKB/TrEMBL
Pfam	LINES_C	UniProtKB/TrEMBL
	LINES_N	UniProtKB/TrEMBL
Superfamily-SCOP	SSF48371	UniProtKB/TrEMBL
UniProt	A0A2R9CIM1_PANPA	UniProtKB/TrEMBL
	A0A2R9CRV3_PANPA	UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM