EFNB2 (ephrin B2) - Rat Genome Database

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Gene: EFNB2 (ephrin B2) Pan paniscus
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Symbol: EFNB2
Name: ephrin B2
RGD ID: 11858405
Description: ENCODES a protein that exhibits ephrin receptor binding (ortholog); signaling receptor binding (ortholog); INVOLVED IN adherens junction organization (ortholog); animal organ morphogenesis (ortholog); blood vessel morphogenesis (ortholog); PARTICIPATES IN ephrin - ephrin receptor bidirectional signaling axis; ASSOCIATED WITH Anal Atresia, Hypospadias, and Penoscrotal Inversion (ortholog); irritable bowel syndrome (ortholog); Liver Neoplasms (ortholog); FOUND IN glutamatergic synapse (ortholog); integral component of postsynaptic density membrane (ortholog); integral component of presynaptic membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: ephrin-B2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.113106,770,296 - 106,815,542 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl13106,770,296 - 106,815,548 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01387,629,831 - 87,675,652 (-)NCBIMhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
EFNB2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.113106,770,296 - 106,815,542 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl13106,770,296 - 106,815,548 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01387,629,831 - 87,675,652 (-)NCBIMhudiblu_PPA_v0panPan3
EFNB2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl13106,489,745 - 106,535,662 (-)EnsemblGRCh38hg38GRCh38
GRCh3813106,489,745 - 106,535,662 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh3713107,142,093 - 107,188,010 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3613105,940,094 - 105,985,338 (-)NCBINCBI36hg18NCBI36
Build 3413105,940,097 - 105,985,338NCBI
Celera1387,986,327 - 88,031,570 (-)NCBI
Cytogenetic Map13q33.3NCBI
HuRef1387,733,581 - 87,778,804 (-)NCBIHuRef
CHM1_113107,110,751 - 107,156,066 (-)NCBICHM1_1
Efnb2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3988,667,235 - 8,711,242 (-)NCBIGRCm39mm39
GRCm39 Ensembl88,667,434 - 8,711,242 (-)Ensembl
GRCm3888,617,235 - 8,661,242 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl88,617,434 - 8,661,242 (-)EnsemblGRCm38mm10GRCm38
MGSCv3788,617,439 - 8,660,773 (-)NCBIGRCm37mm9NCBIm37
MGSCv3688,617,406 - 8,660,745 (-)NCBImm8
Celera88,790,063 - 8,833,410 (-)NCBICelera
Cytogenetic Map8A1.1NCBI
cM Map83.42NCBI
Efnb2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21680,783,389 - 80,827,420 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1680,783,417 - 80,824,391 (+)Ensembl
Rnor_6.01686,631,151 - 86,672,050 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1686,631,064 - 86,675,049 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01686,044,304 - 86,085,652 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41686,187,639 - 86,228,023 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11686,173,265 - 86,214,062 (+)NCBI
Celera1678,561,525 - 78,602,409 (+)NCBICelera
Cytogenetic Map16q12.5NCBI
Efnb2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554045,000,906 - 5,030,126 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554045,000,906 - 5,030,068 (+)NCBIChiLan1.0ChiLan1.0
EFNB2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12255,567,992 - 55,609,210 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2255,566,039 - 55,609,443 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2255,325,721 - 55,366,922 (-)NCBI
ROS_Cfam_1.02256,079,969 - 56,121,281 (-)NCBI
UMICH_Zoey_3.12255,672,831 - 55,714,054 (-)NCBI
UNSW_CanFamBas_1.02255,659,581 - 55,700,849 (-)NCBI
UU_Cfam_GSD_1.02255,698,309 - 55,739,598 (-)NCBI
Efnb2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945190,770,785 - 190,813,404 (-)NCBI
SpeTri2.0NW_0049364725,138,751 - 5,181,630 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EFNB2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1174,186,640 - 74,233,354 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11174,188,337 - 74,232,768 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21181,565,082 - 81,609,512 (-)NCBISscrofa10.2Sscrofa10.2susScr3
EFNB2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1384,904,421 - 84,949,292 (-)NCBI
ChlSab1.1 Ensembl384,904,435 - 84,949,465 (-)Ensembl
Vero_WHO_p1.0NW_02366604641,467,321 - 41,512,883 (-)NCBI
Efnb2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247935,089,675 - 5,130,022 (+)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000034216   ⟹   ENSPPAP00000011558
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl13106,770,296 - 106,815,548 (-)Ensembl
RefSeq Acc Id: XM_003832071   ⟹   XP_003832119
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.113106,770,296 - 106,815,542 (-)NCBI
Mhudiblu_PPA_v01387,629,831 - 87,675,652 (-)NCBI
Sequence:
RefSeq Acc Id: XM_034936958   ⟹   XP_034792849
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v01387,641,809 - 87,675,652 (-)NCBI
Protein Sequences
Protein RefSeqs XP_003832119 (Get FASTA)   NCBI Sequence Viewer  
  XP_034792849 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_003832119   ⟸   XM_003832071
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_034792849   ⟸   XM_034936958
- Peptide Label: isoform X2
RefSeq Acc Id: ENSPPAP00000011558   ⟸   ENSPPAT00000034216


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000028987 Ensembl, ENTREZGENE
Ensembl Protein ENSPPAP00000011558 ENTREZGENE
NCBI Gene EFNB2 ENTREZGENE