RP1L1 (RP1 like 1) - Rat Genome Database

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Gene: RP1L1 (RP1 like 1) Pan paniscus
Analyze
Symbol: RP1L1
Name: RP1 like 1
RGD ID: 11853770
Description: INVOLVED IN photoreceptor cell development (ortholog); photoreceptor cell maintenance (ortholog); ASSOCIATED WITH Epidermolysis Bullosa Simplex 5D with Nail Dystrophy (ortholog); fundus dystrophy (ortholog); genetic disease (ortholog); FOUND IN axoneme (ortholog); photoreceptor connecting cilium (ortholog); photoreceptor outer segment (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: retinitis pigmentosa 1 like 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2727,058,051 - 27,078,116 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan183,090,439 - 3,110,497 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v088,586,410 - 8,605,275 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
RP1L1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2727,058,051 - 27,078,116 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan183,090,439 - 3,110,497 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v088,586,410 - 8,605,275 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
RP1L1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38810,606,349 - 10,655,143 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl810,606,349 - 10,712,187 (-)EnsemblGRCh38hg38GRCh38
GRCh37810,463,859 - 10,512,653 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36810,501,269 - 10,550,027 (-)NCBINCBI36Build 36hg18NCBI36
Build 34810,501,270 - 10,550,027NCBI
Celera89,591,303 - 9,640,515 (-)NCBICelera
Cytogenetic Map8p23.1NCBI
HuRef89,394,231 - 9,443,153 (-)NCBIHuRef
CHM1_1810,529,596 - 10,578,235 (-)NCBICHM1_1
T2T-CHM13v2.089,083,816 - 9,132,787 (+)NCBIT2T-CHM13v2.0
Rp1l1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391464,229,880 - 64,270,955 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1464,229,955 - 64,272,474 (+)EnsemblGRCm39 Ensembl
GRCm381463,992,431 - 64,033,506 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1463,992,506 - 64,035,025 (+)EnsemblGRCm38mm10GRCm38
MGSCv371464,611,268 - 64,652,343 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361462,946,541 - 62,987,953 (+)NCBIMGSCv36mm8
Celera1461,769,430 - 61,810,604 (+)NCBICelera
Cytogenetic Map14D1NCBI
cM Map1433.34NCBI
Rp1l1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81542,435,803 - 42,447,165 (+)NCBIGRCr8
mRatBN7.21538,259,907 - 38,271,269 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1538,259,928 - 38,270,316 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01547,344,380 - 47,384,461 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1547,373,120 - 47,383,508 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01551,117,811 - 51,143,753 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1537,912,769 - 37,952,844 (+)NCBICelera
Cytogenetic Map15p12NCBI
Rp1l1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495540352,180,612 - 52,200,569 (-)NCBIChiLan1.0ChiLan1.0
RP1L1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12527,317,102 - 27,332,075 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2527,325,658 - 27,330,556 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2527,977,022 - 27,991,705 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02527,474,859 - 27,489,549 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12527,429,640 - 27,444,331 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02527,323,498 - 27,338,179 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02527,477,657 - 27,492,342 (+)NCBIUU_Cfam_GSD_1.0
Rp1l1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049436,021,659 - 6,058,745 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049366752,527,406 - 2,564,464 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RP1L1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11413,790,287 - 13,841,230 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21415,156,836 - 15,192,516 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RP1L1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.188,479,768 - 8,499,497 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605233,925,836 - 33,944,748 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rp1l1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475824,480,805 - 24,516,524 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_034965624 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_034965624   ⟹   XP_034821515
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2727,058,051 - 27,078,116 (-)NCBI
NHGRI_mPanPan183,090,439 - 3,110,497 (-)NCBI
Mhudiblu_PPA_v088,586,410 - 8,605,275 (+)NCBI
Protein Sequences
Protein RefSeqs XP_034821515 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_034821515   ⟸   XM_034965624


Additional Information

Database Acc Id Source(s)
NCBI Gene RP1L1 ENTREZGENE