CFAP46 (cilia and flagella associated protein 46) - Rat Genome Database

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Gene: CFAP46 (cilia and flagella associated protein 46) Pan paniscus
Analyze
Symbol: CFAP46
Name: cilia and flagella associated protein 46
RGD ID: 11851767
Description: INVOLVED IN axoneme assembly (inferred); cilium movement involved in cell motility (inferred); ASSOCIATED WITH distal 10q deletion syndrome (ortholog); genetic disease (ortholog); situs inversus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: cilia- and flagella-associated protein 46; cilia- and flagella-associated protein 46-like; LOC117978639; LOC117978640; tetratricopeptide repeat domain 40; TTC40
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v28144,817,191 - 145,032,889 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan110144,822,548 - 145,038,246 (-)NCBINHGRI_mPanPan1
PanPan1.110133,706,337 - 133,850,390 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl10133,706,366 - 133,850,322 (-)Ensemblpanpan1.1panPan2


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
CFAP46
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v28144,817,191 - 145,032,889 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan110144,822,548 - 145,038,246 (-)NCBINHGRI_mPanPan1
PanPan1.110133,706,337 - 133,850,390 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl10133,706,366 - 133,850,322 (-)Ensemblpanpan1.1panPan2
CFAP46
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3810132,808,392 - 132,942,570 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl10132,808,392 - 132,942,823 (-)EnsemblGRCh38hg38GRCh38
GRCh3710134,621,896 - 134,756,074 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3610134,471,886 - 134,521,226 (-)NCBINCBI36Build 36hg18NCBI36
Build 3410134,471,886 - 134,521,226NCBI
Celera10128,844,843 - 128,896,279 (+)NCBICelera
Cytogenetic Map10q26.3NCBI
HuRef10128,173,144 - 128,306,452 (-)NCBIHuRef
CHM1_110134,903,770 - 135,036,747 (-)NCBICHM1_1
T2T-CHM13v2.010133,757,635 - 133,892,019 (-)NCBIT2T-CHM13v2.0
Cfap46
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397139,180,830 - 139,264,701 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7139,180,867 - 139,263,733 (-)EnsemblGRCm39 Ensembl
GRCm387139,600,914 - 139,684,787 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7139,600,951 - 139,683,817 (-)EnsemblGRCm38mm10GRCm38
MGSCv377146,786,850 - 146,802,228 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367139,452,271 - 139,478,738 (-)NCBIMGSCv36mm8
Celera7139,395,090 - 139,410,567 (-)NCBICelera
Cytogenetic Map7F4NCBI
cM Map784.57NCBI
Cfap46
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81203,832,818 - 203,912,389 (-)NCBIGRCr8
mRatBN7.21194,403,212 - 194,482,790 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1194,403,211 - 194,482,730 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01211,943,436 - 212,022,287 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1211,983,729 - 212,022,212 (-)NCBIRnor6.0rn6Rnor6.0
Rnor_5.01218,867,208 - 218,944,408 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41199,435,733 - 199,504,533 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1192,080,890 - 192,160,962 (-)NCBICelera
Cytogenetic Map1q41NCBI
Cfap46
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495547710,413,017 - 10,517,337 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495547710,412,774 - 10,517,415 (-)NCBIChiLan1.0ChiLan1.0
CFAP46
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12840,581,808 - 40,674,124 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2840,581,841 - 40,676,168 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2840,645,575 - 40,740,750 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02841,225,002 - 41,321,355 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12840,708,380 - 40,804,079 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02840,698,104 - 40,793,884 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02841,100,821 - 41,196,663 (-)NCBIUU_Cfam_GSD_1.0
Cfap46
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244072136,434,461 - 6,514,655 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648619,046,898 - 19,126,745 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648619,046,898 - 19,126,746 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CFAP46
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14140,916,092 - 141,002,708 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114140,916,089 - 141,002,805 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214152,888,318 - 152,926,967 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103216748
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.19125,395,431 - 125,530,296 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl9125,396,428 - 125,530,178 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604887,095,639 - 87,151,897 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cfap46
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473713,897,221 - 14,015,533 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473713,897,146 - 14,021,257 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000043178   ⟹   ENSPPAP00000020385
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl10133,706,366 - 133,850,322 (-)Ensembl
RefSeq Acc Id: XM_055093516   ⟹   XP_054949491
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v28144,817,191 - 145,032,889 (-)NCBI
NHGRI_mPanPan110144,822,548 - 145,038,246 (-)NCBI
Protein Sequences
Protein RefSeqs XP_054949491 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000020385.1
Reference Protein Sequences
RefSeq Acc Id: ENSPPAP00000020385   ⟸   ENSPPAT00000043178
RefSeq Acc Id: XP_054949491   ⟸   XM_055093516
- UniProtKB: A0A2R9AX45 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000033392 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000043178.1 UniProtKB/TrEMBL
InterPro CFAP46 UniProtKB/TrEMBL
NCBI Gene CFAP46 ENTREZGENE
PANTHER CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 46 UniProtKB/TrEMBL
  PTHR15977 UniProtKB/TrEMBL
Pfam Peptidase_C50 UniProtKB/TrEMBL
UniProt A0A2R9AX45 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-04-20 CFAP46  cilia and flagella associated protein 46  LOC117978639  cilia- and flagella-associated protein 46-like  Data merged from RGD:32730500 737654 PROVISIONAL
2023-04-20 CFAP46  cilia and flagella associated protein 46  LOC117978640  cilia- and flagella-associated protein 46-like  Data merged from RGD:32730806 737654 PROVISIONAL