CCDC85B (coiled-coil domain containing 85B) - Rat Genome Database

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Gene: CCDC85B (coiled-coil domain containing 85B) Pan paniscus
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Symbol: CCDC85B
Name: coiled-coil domain containing 85B
RGD ID: 11851564
Description: ENCODES a protein that exhibits delta-catenin binding (ortholog); INVOLVED IN negative regulation of cell growth (ortholog); negative regulation of DNA-templated transcription (ortholog); negative regulation of fat cell differentiation (ortholog); ASSOCIATED WITH Aicardi-Goutieres Syndrome 3 (ortholog); autosomal recessive cutis laxa type IB (ortholog); Bardet-Biedl syndrome (ortholog); FOUND IN adherens junction (ortholog); centrosome (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: coiled-coil domain-containing protein 85B
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2967,119,320 - 67,120,171 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11168,161,962 - 68,162,975 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01161,250,913 - 61,251,926 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11164,578,202 - 64,581,942 (+)NCBIpanpan1.1PanPan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
CCDC85B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2967,119,320 - 67,120,171 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11168,161,962 - 68,162,975 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01161,250,913 - 61,251,926 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11164,578,202 - 64,581,942 (+)NCBIpanpan1.1PanPan1.1panPan2
CCDC85B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381165,890,673 - 65,891,635 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1165,890,673 - 65,891,635 (+)EnsemblGRCh38hg38GRCh38
GRCh371165,658,144 - 65,659,106 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361165,414,451 - 65,415,682 (+)NCBINCBI36Build 36hg18NCBI36
Celera1162,981,782 - 62,983,013 (+)NCBICelera
Cytogenetic Map11q13.1NCBI
HuRef1161,984,466 - 61,985,697 (+)NCBIHuRef
CHM1_11165,542,289 - 65,543,520 (+)NCBICHM1_1
T2T-CHM13v2.01165,883,735 - 65,884,697 (+)NCBIT2T-CHM13v2.0
Ccdc85b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39195,503,191 - 5,507,591 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl195,503,208 - 5,507,922 (-)EnsemblGRCm39 Ensembl
GRCm38195,453,163 - 5,457,563 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl195,453,180 - 5,457,894 (-)EnsemblGRCm38mm10GRCm38
MGSCv37195,453,163 - 5,457,549 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36195,456,539 - 5,457,549 (-)NCBIMGSCv36mm8
Celera195,325,136 - 5,329,522 (-)NCBICelera
Cytogenetic Map19ANCBI
cM Map194.33NCBI
Ccdc85b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81212,192,979 - 212,193,994 (-)NCBIGRCr8
mRatBN7.21202,763,645 - 202,764,660 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1202,763,631 - 202,764,703 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1211,115,951 - 211,116,966 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01218,209,051 - 218,210,066 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01210,900,092 - 210,901,107 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01220,835,647 - 220,837,220 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01227,764,980 - 227,766,556 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41208,099,703 - 208,100,997 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1200,299,725 - 200,301,298 (-)NCBICelera
Cytogenetic Map1q43NCBI
Ccdc85b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542219,432,602 - 19,433,210 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542219,432,368 - 19,433,386 (-)NCBIChiLan1.0ChiLan1.0
CCDC85B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11851,375,015 - 51,376,044 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1851,375,261 - 51,375,866 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1849,983,525 - 49,984,536 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01852,413,106 - 52,414,117 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1852,413,212 - 52,414,066 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11851,513,175 - 51,514,186 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01851,087,534 - 51,088,545 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01851,876,848 - 51,877,859 (-)NCBIUU_Cfam_GSD_1.0
Ccdc85b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049477,207,023 - 7,208,062 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365993,649,613 - 3,650,221 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365993,649,372 - 3,650,408 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCDC85B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl26,436,794 - 6,437,808 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.126,436,787 - 6,437,828 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.225,540,816 - 5,542,354 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CCDC85B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.118,366,166 - 8,367,670 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl18,366,409 - 8,367,017 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038105,655,347 - 105,656,856 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ccdc85b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476720,525,942 - 20,526,550 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476720,525,728 - 20,527,337 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_034933047 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XM_034933047   ⟹   XP_034788938
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2967,119,320 - 67,120,171 (+)NCBI
NHGRI_mPanPan11168,161,962 - 68,162,975 (+)NCBI
Mhudiblu_PPA_v01161,250,913 - 61,251,926 (+)NCBI
Protein Sequences
Protein RefSeqs XP_034788938 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_034788938   ⟸   XM_034933047


Additional Information

Database Acc Id Source(s)
NCBI Gene CCDC85B ENTREZGENE