GOPC (golgi associated PDZ and coiled-coil motif containing) - Rat Genome Database

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Gene: GOPC (golgi associated PDZ and coiled-coil motif containing) Pan paniscus
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Symbol: GOPC
Name: golgi associated PDZ and coiled-coil motif containing
RGD ID: 11851041
Description: ENCODES a protein that exhibits frizzled binding (ortholog); GTPase regulator activity (ortholog); identical protein binding (ortholog); INVOLVED IN negative regulation of anion channel activity (ortholog); negative regulation of protein localization to cell surface (ortholog); spermatid nucleus differentiation (ortholog); ASSOCIATED WITH atrial fibrillation (ortholog); autistic disorder (ortholog); body dysmorphic disorder (ortholog); FOUND IN cytoplasm (ortholog); membrane (ortholog); plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.16119,509,936 - 119,552,010 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6119,509,936 - 119,552,010 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v06115,368,682 - 115,411,140 (-)NCBIMhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
GOPC
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.16119,509,936 - 119,552,010 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6119,509,936 - 119,552,010 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v06115,368,682 - 115,411,140 (-)NCBIMhudiblu_PPA_v0panPan3
GOPC
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl6117,560,269 - 117,602,542 (-)EnsemblGRCh38hg38GRCh38
GRCh386117,560,269 - 117,602,520 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh376117,881,432 - 117,923,674 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 366117,988,125 - 118,030,374 (-)NCBINCBI36hg18NCBI36
Build 346117,991,109 - 118,030,220NCBI
Celera6118,624,329 - 118,666,606 (-)NCBI
Cytogenetic Map6q22.1NCBI
HuRef6115,462,063 - 115,504,349 (-)NCBIHuRef
CHM1_16118,145,375 - 118,187,647 (-)NCBICHM1_1
Gopc
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391052,213,120 - 52,258,220 (-)NCBIGRCm39mm39
GRCm39 Ensembl1052,211,946 - 52,258,220 (-)Ensembl
GRCm381052,337,024 - 52,382,124 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1052,335,850 - 52,382,124 (-)EnsemblGRCm38mm10GRCm38
MGSCv371052,056,887 - 52,101,881 (-)NCBIGRCm37mm9NCBIm37
MGSCv361052,025,496 - 52,070,490 (-)NCBImm8
Celera1053,174,463 - 53,219,811 (-)NCBICelera
Cytogenetic Map10B3NCBI
Gopc
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22031,727,617 - 31,776,928 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl2031,727,620 - 31,776,903 (-)Ensembl
Rnor_6.02033,471,355 - 33,521,281 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2033,471,351 - 33,521,311 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02035,250,254 - 35,299,353 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42031,055,284 - 31,105,701 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.12031,071,736 - 31,119,338 (-)NCBI
Celera2033,125,468 - 33,174,815 (-)NCBICelera
Cytogenetic Map20q11NCBI
Gopc
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955436743,616 - 777,878 (-)NCBIChiLan1.0ChiLan1.0
GOPC
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1157,790,118 - 57,829,022 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl157,792,647 - 57,828,820 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha158,589,110 - 58,629,156 (-)NCBI
ROS_Cfam_1.0157,970,112 - 58,010,164 (-)NCBI
UMICH_Zoey_3.1157,871,500 - 57,911,541 (-)NCBI
UNSW_CanFamBas_1.0157,712,463 - 57,752,507 (-)NCBI
UU_Cfam_GSD_1.0158,343,632 - 58,383,890 (-)NCBI
Gopc
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946108,509,927 - 108,548,999 (-)NCBI
SpeTri2.0NW_004936658614,711 - 655,874 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GOPC
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl144,239,383 - 44,287,198 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1144,239,364 - 44,285,886 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2149,584,131 - 49,631,566 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GOPC
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11356,229,780 - 56,270,829 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl1356,229,810 - 56,272,830 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604028,567,387 - 28,608,428 (+)NCBIVero_WHO_p1.0
Gopc
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462479812,188,460 - 12,216,542 (+)NCBIHetGla_female_1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000062026   ⟹   ENSPPAP00000039117
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl6119,509,936 - 119,552,010 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000062028   ⟹   ENSPPAP00000039119
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl6119,509,936 - 119,552,010 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000062039   ⟹   ENSPPAP00000039130
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl6119,512,909 - 119,551,756 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000062043   ⟹   ENSPPAP00000039134
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl6119,512,909 - 119,551,756 (-)Ensembl
RefSeq Acc Id: XM_003827583   ⟹   XP_003827631
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.16119,509,936 - 119,552,010 (-)NCBI
Mhudiblu_PPA_v06115,368,682 - 115,411,140 (-)NCBI
Sequence:
RefSeq Acc Id: XM_003827584   ⟹   XP_003827632
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.16119,509,936 - 119,552,010 (-)NCBI
Mhudiblu_PPA_v06115,368,682 - 115,411,124 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003827631 (Get FASTA)   NCBI Sequence Viewer  
  XP_003827632 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_003827631   ⟸   XM_003827583
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_003827632   ⟸   XM_003827584
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSPPAP00000039130   ⟸   ENSPPAT00000062039
RefSeq Acc Id: ENSPPAP00000039119   ⟸   ENSPPAT00000062028
RefSeq Acc Id: ENSPPAP00000039117   ⟸   ENSPPAT00000062026
RefSeq Acc Id: ENSPPAP00000039134   ⟸   ENSPPAT00000062043
Protein Domains
PDZ


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000042271 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSPPAP00000039117 ENTREZGENE, UniProtKB/TrEMBL
  ENSPPAP00000039119 ENTREZGENE, UniProtKB/TrEMBL
  ENSPPAP00000039130 UniProtKB/TrEMBL
  ENSPPAP00000039134 UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000062026 UniProtKB/TrEMBL
  ENSPPAT00000062028 UniProtKB/TrEMBL
  ENSPPAT00000062039 UniProtKB/TrEMBL
  ENSPPAT00000062043 UniProtKB/TrEMBL
Gene3D-CATH 2.30.42.10 UniProtKB/TrEMBL
InterPro GOPC UniProtKB/TrEMBL
  PDZ UniProtKB/TrEMBL
  PDZ_sf UniProtKB/TrEMBL
KEGG Report pps:100971760 UniProtKB/TrEMBL
NCBI Gene GOPC ENTREZGENE
PANTHER PTHR16528 UniProtKB/TrEMBL
Pfam PDZ UniProtKB/TrEMBL
PROSITE PDZ UniProtKB/TrEMBL
SMART PDZ UniProtKB/TrEMBL
Superfamily-SCOP SSF50156 UniProtKB/TrEMBL
UniProt A0A2R9CB14_PANPA UniProtKB/TrEMBL
  A0A2R9CB62_PANPA UniProtKB/TrEMBL
  A0A2R9CB77_PANPA UniProtKB/TrEMBL
  A0A2R9CLT3_PANPA UniProtKB/TrEMBL