GATAD2B (GATA zinc finger domain containing 2B) - Rat Genome Database

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Gene: GATAD2B (GATA zinc finger domain containing 2B) Pan paniscus
Analyze
Symbol: GATAD2B
Name: GATA zinc finger domain containing 2B
RGD ID: 11849334
Description: ENCODES a protein that exhibits sequence-specific DNA binding (inferred); zinc ion binding (inferred); INVOLVED IN chromatin remodeling (inferred); negative regulation of transcription by RNA polymerase II (inferred); PARTICIPATES IN CHD family mediated chromatin remodeling pathway; ASSOCIATED WITH autism spectrum disorder (ortholog); GAND syndrome (ortholog); gastrointestinal stromal tumor (ortholog); FOUND IN chromosome, telomeric region (inferred); nucleoplasm (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: transcriptional repressor p66-beta
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2195,907,189 - 96,027,933 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1195,642,428 - 95,763,170 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01129,161,151 - 129,279,702 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11132,794,458 - 132,907,674 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1132,794,458 - 132,813,108 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
GATAD2B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2195,907,189 - 96,027,933 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1195,642,428 - 95,763,170 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01129,161,151 - 129,279,702 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11132,794,458 - 132,907,674 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1132,794,458 - 132,813,108 (-)Ensemblpanpan1.1panPan2
GATAD2B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381153,804,725 - 153,922,972 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1153,789,030 - 153,923,360 (-)EnsemblGRCh38hg38GRCh38
GRCh371153,777,201 - 153,895,448 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361152,043,825 - 152,162,075 (-)NCBINCBI36Build 36hg18NCBI36
Celera1126,848,798 - 126,967,204 (-)NCBICelera
Cytogenetic Map1q21.3NCBI
HuRef1125,139,660 - 125,258,037 (-)NCBIHuRef
CHM1_11155,173,146 - 155,291,764 (-)NCBICHM1_1
T2T-CHM13v2.01152,941,989 - 153,060,229 (-)NCBIT2T-CHM13v2.0
Gatad2b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39390,200,488 - 90,270,712 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl390,200,485 - 90,270,714 (+)EnsemblGRCm39 Ensembl
GRCm38390,293,181 - 90,363,405 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl390,293,178 - 90,363,407 (+)EnsemblGRCm38mm10GRCm38
MGSCv37390,145,576 - 90,162,042 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36390,427,581 - 90,444,047 (+)NCBIMGSCv36mm8
Celera390,379,290 - 90,395,690 (+)NCBICelera
Cytogenetic Map3F1NCBI
cM Map339.21NCBI
Gatad2b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82178,046,192 - 178,127,633 (+)NCBIGRCr8
mRatBN7.22175,748,594 - 175,829,837 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2175,749,433 - 175,825,542 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2182,889,438 - 182,965,027 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02180,911,832 - 180,987,269 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02175,512,135 - 175,587,550 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02189,654,871 - 189,735,056 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2189,655,702 - 189,733,540 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02209,087,998 - 209,165,690 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42182,537,125 - 182,615,717 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12182,487,230 - 182,565,822 (+)NCBI
Celera2169,684,333 - 169,759,364 (+)NCBICelera
Cytogenetic Map2q34NCBI
Gatad2b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955545430,245 - 517,790 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955545424,997 - 519,031 (-)NCBIChiLan1.0ChiLan1.0
GATAD2B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1743,201,307 - 43,295,868 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl743,254,305 - 43,294,211 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha742,691,099 - 42,787,860 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0743,071,124 - 43,167,834 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl743,071,517 - 43,166,099 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1742,849,795 - 42,946,193 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0742,903,094 - 42,999,568 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0743,187,301 - 43,283,284 (+)NCBIUU_Cfam_GSD_1.0
Gatad2b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505824,548,713 - 24,567,772 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365803,579,119 - 3,597,667 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365803,579,119 - 3,597,644 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GATAD2B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl495,766,490 - 95,864,435 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1495,766,989 - 95,864,502 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24104,747,140 - 104,764,791 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GATAD2B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1209,888,586 - 10,003,215 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl209,888,705 - 10,000,099 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660389,258,704 - 9,378,252 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gatad2b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248853,362,823 - 3,375,179 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248853,297,191 - 3,375,908 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000055855   ⟹   ENSPPAP00000032985
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1132,794,458 - 132,813,108 (-)Ensembl
RefSeq Acc Id: XM_034936183   ⟹   XP_034792074
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2195,907,189 - 96,027,933 (+)NCBI
NHGRI_mPanPan1195,642,428 - 95,763,170 (+)NCBI
Mhudiblu_PPA_v01129,162,527 - 129,279,702 (-)NCBI
RefSeq Acc Id: XM_055113582   ⟹   XP_054969557
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2195,909,723 - 96,027,933 (+)NCBI
NHGRI_mPanPan1195,644,936 - 95,763,170 (+)NCBI
RefSeq Acc Id: XM_055113584   ⟹   XP_054969559
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2195,909,707 - 96,027,933 (+)NCBI
NHGRI_mPanPan1195,644,908 - 95,763,170 (+)NCBI
Protein Sequences
Protein RefSeqs XP_034792074 (Get FASTA)   NCBI Sequence Viewer  
  XP_054969557 (Get FASTA)   NCBI Sequence Viewer  
  XP_054969559 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000032985.1
Reference Protein Sequences
RefSeq Acc Id: XP_034792074   ⟸   XM_034936183
- Peptide Label: isoform X3
- UniProtKB: A0A2R9BWZ1 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSPPAP00000032985   ⟸   ENSPPAT00000055855
RefSeq Acc Id: XP_054969559   ⟸   XM_055113584
- Peptide Label: isoform X2
RefSeq Acc Id: XP_054969557   ⟸   XM_055113582
- Peptide Label: isoform X1
Protein Domains
GATA-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000039339 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000055855.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.50.10 UniProtKB/TrEMBL
  6.10.250.1650 UniProtKB/TrEMBL
InterPro P66 UniProtKB/TrEMBL
  P66_CC UniProtKB/TrEMBL
  Znf_GATA UniProtKB/TrEMBL
  Znf_NHR/GATA UniProtKB/TrEMBL
KEGG Report pps:100976791 UniProtKB/TrEMBL
NCBI Gene GATAD2B ENTREZGENE
PANTHER PTHR13455 UniProtKB/TrEMBL
  TRANSCRIPTIONAL REPRESSOR P66-BETA UniProtKB/TrEMBL
Pfam GATA UniProtKB/TrEMBL
  P66_CC UniProtKB/TrEMBL
PROSITE GATA_ZN_FINGER_2 UniProtKB/TrEMBL
Superfamily-SCOP Glucocorticoid receptor-like (DNA-binding domain) UniProtKB/TrEMBL
UniProt A0A2R9BWZ1 ENTREZGENE, UniProtKB/TrEMBL