PXYLP1 (2-phosphoxylose phosphatase 1) - Rat Genome Database

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Gene: PXYLP1 (2-phosphoxylose phosphatase 1) Pan paniscus
Analyze
Symbol: PXYLP1
Name: 2-phosphoxylose phosphatase 1
RGD ID: 11848452
Description: ENCODES a protein that exhibits phosphatase activity (inferred); INVOLVED IN chondroitin sulfate proteoglycan biosynthetic process (inferred); glycosaminoglycan biosynthetic process (inferred); positive regulation of heparan sulfate proteoglycan biosynthetic process (inferred); FOUND IN Golgi apparatus (inferred); Golgi membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: acid phosphatase-like 2; ACPL2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22139,141,292 - 139,204,377 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13139,146,024 - 139,209,109 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03138,264,529 - 138,327,615 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13145,862,427 - 145,925,073 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3145,864,356 - 145,925,073 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
PXYLP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22139,141,292 - 139,204,377 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13139,146,024 - 139,209,109 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03138,264,529 - 138,327,615 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13145,862,427 - 145,925,073 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3145,864,356 - 145,925,073 (+)Ensemblpanpan1.1panPan2
PXYLP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383141,231,825 - 141,294,924 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3141,228,726 - 141,367,753 (+)EnsemblGRCh38hg38GRCh38
GRCh373140,950,667 - 141,013,766 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363142,433,372 - 142,496,176 (+)NCBINCBI36Build 36hg18NCBI36
Build 343142,433,400 - 142,496,173NCBI
Celera3139,374,122 - 139,436,924 (+)NCBICelera
Cytogenetic Map3q23NCBI
HuRef3138,325,840 - 138,388,459 (+)NCBIHuRef
CHM1_13140,913,654 - 140,976,290 (+)NCBICHM1_1
T2T-CHM13v2.03143,979,382 - 144,042,517 (+)NCBIT2T-CHM13v2.0
Pxylp1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39996,705,396 - 96,774,732 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl996,705,389 - 96,774,722 (-)EnsemblGRCm39 Ensembl
GRCm38996,823,336 - 96,892,688 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl996,823,336 - 96,892,669 (-)EnsemblGRCm38mm10GRCm38
MGSCv37996,723,762 - 96,789,841 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36996,632,695 - 96,698,774 (-)NCBIMGSCv36mm8
Celera996,382,737 - 96,449,124 (-)NCBICelera
Cytogenetic Map9E3.3NCBI
cM Map950.71NCBI
Pxylp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88106,299,303 - 106,364,603 (-)NCBIGRCr8
mRatBN7.2897,419,766 - 97,485,163 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl897,419,776 - 97,485,064 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8103,088,821 - 103,154,162 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08101,288,077 - 101,353,418 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0899,127,032 - 99,192,374 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08104,724,728 - 104,790,639 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8104,724,743 - 104,790,639 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08104,171,280 - 104,237,228 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48101,917,842 - 101,983,158 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.18101,937,297 - 102,002,613 (-)NCBI
Celera896,861,823 - 96,926,746 (-)NCBICelera
Cytogenetic Map8q31NCBI
Pxylp1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555084,390,455 - 4,449,782 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555084,390,647 - 4,449,782 (-)NCBIChiLan1.0ChiLan1.0
PXYLP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12337,145,065 - 37,197,808 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2337,145,086 - 37,196,427 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2337,118,960 - 37,191,465 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02337,656,780 - 37,729,280 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2337,656,844 - 37,729,266 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12337,339,109 - 37,411,612 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02337,417,071 - 37,489,492 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02337,659,659 - 37,732,146 (+)NCBIUU_Cfam_GSD_1.0
Pxylp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560276,335,793 - 76,393,785 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365403,075,624 - 3,135,182 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365403,075,618 - 3,133,554 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PXYLP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1381,970,447 - 82,046,028 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11381,951,336 - 82,049,385 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21389,793,696 - 89,886,110 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PXYLP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11549,307,124 - 49,369,961 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1549,306,714 - 49,341,565 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604122,249,609 - 22,313,996 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pxylp1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473017,845,851 - 17,928,280 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473017,845,818 - 17,928,021 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSPPAT00000038107   ⟹   ENSPPAP00000015417
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl3145,864,356 - 145,925,073 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000038109   ⟹   ENSPPAP00000015419
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl3145,892,815 - 145,925,073 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000038112   ⟹   ENSPPAP00000015422
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl3145,903,091 - 145,925,073 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000038116   ⟹   ENSPPAP00000015426
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl3145,908,433 - 145,923,631 (+)Ensembl
RefSeq Acc Id: XM_034957516   ⟹   XP_034813407
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22139,141,292 - 139,204,377 (+)NCBI
NHGRI_mPanPan13139,146,024 - 139,209,109 (+)NCBI
Mhudiblu_PPA_v03138,264,529 - 138,327,615 (+)NCBI
RefSeq Acc Id: XM_055110543   ⟹   XP_054966518
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22139,141,422 - 139,204,377 (+)NCBI
NHGRI_mPanPan13139,146,154 - 139,209,109 (+)NCBI
RefSeq Acc Id: XM_055110544   ⟹   XP_054966519
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22139,141,488 - 139,204,377 (+)NCBI
NHGRI_mPanPan13139,146,220 - 139,209,109 (+)NCBI
RefSeq Acc Id: XM_055110545   ⟹   XP_054966520
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22139,141,442 - 139,204,377 (+)NCBI
NHGRI_mPanPan13139,146,174 - 139,209,109 (+)NCBI
RefSeq Acc Id: XM_055110546   ⟹   XP_054966521
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22139,141,442 - 139,204,377 (+)NCBI
NHGRI_mPanPan13139,146,174 - 139,209,109 (+)NCBI
RefSeq Acc Id: XM_055110547   ⟹   XP_054966522
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22139,183,865 - 139,204,377 (+)NCBI
NHGRI_mPanPan13139,188,600 - 139,209,109 (+)NCBI
RefSeq Acc Id: XM_055110548   ⟹   XP_054966523
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22139,172,751 - 139,204,377 (+)NCBI
NHGRI_mPanPan13139,177,483 - 139,209,109 (+)NCBI
RefSeq Acc Id: XM_063602959   ⟹   XP_063459029
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22139,141,381 - 139,204,377 (+)NCBI
RefSeq Acc Id: XP_034813407   ⟸   XM_034957516
- Peptide Label: isoform X1
- UniProtKB: A0A2R9AEN5 (UniProtKB/TrEMBL),   A0A2R9AIJ8 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSPPAP00000015426   ⟸   ENSPPAT00000038116
Ensembl Acc Id: ENSPPAP00000015422   ⟸   ENSPPAT00000038112
Ensembl Acc Id: ENSPPAP00000015419   ⟸   ENSPPAT00000038109
Ensembl Acc Id: ENSPPAP00000015417   ⟸   ENSPPAT00000038107
RefSeq Acc Id: XP_054966518   ⟸   XM_055110543
- Peptide Label: isoform X1
- UniProtKB: A0A2R9AEN5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054966521   ⟸   XM_055110546
- Peptide Label: isoform X1
- UniProtKB: A0A2R9AEN5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054966520   ⟸   XM_055110545
- Peptide Label: isoform X1
- UniProtKB: A0A2R9AEN5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054966519   ⟸   XM_055110544
- Peptide Label: isoform X1
- UniProtKB: A0A2R9AEN5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054966523   ⟸   XM_055110548
- Peptide Label: isoform X2
RefSeq Acc Id: XP_054966522   ⟸   XM_055110547
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063459029   ⟸   XM_063602959
- Peptide Label: isoform X1
- UniProtKB: A0A2R9AEN5 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000030848 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000038107.1 UniProtKB/TrEMBL
  ENSPPAT00000038109.1 UniProtKB/TrEMBL
  ENSPPAT00000038112.1 UniProtKB/TrEMBL
  ENSPPAT00000038116.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.1240 UniProtKB/TrEMBL
InterPro His_Pase_clade-2 UniProtKB/TrEMBL
  His_PPase_superfam UniProtKB/TrEMBL
  Histidine_acid_phosphatase UniProtKB/TrEMBL
NCBI Gene PXYLP1 ENTREZGENE
PANTHER 2-PHOSPHOXYLOSE PHOSPHATASE 1 UniProtKB/TrEMBL
  ACID PHOSPHATASE-RELATED UniProtKB/TrEMBL
Pfam His_Phos_2 UniProtKB/TrEMBL
Superfamily-SCOP SSF53254 UniProtKB/TrEMBL
UniProt A0A2R9ADQ2_PANPA UniProtKB/TrEMBL
  A0A2R9AEN5 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9AEP0_PANPA UniProtKB/TrEMBL
  A0A2R9AIJ8 ENTREZGENE, UniProtKB/TrEMBL