LYG1 (lysozyme g1) - Rat Genome Database

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Gene: LYG1 (lysozyme g1) Pan paniscus
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Symbol: LYG1
Name: lysozyme g1
RGD ID: 11848396
Description: ENCODES a protein that exhibits hydrolase activity (inferred); hydrolase activity, acting on glycosyl bonds (inferred); lysozyme activity (inferred); INVOLVED IN defense response to Gram-positive bacterium (inferred); peptidoglycan catabolic process (inferred); ASSOCIATED WITH genetic disease (ortholog); FOUND IN extracellular region (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: lysozyme g-like protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21229,108,787 - 29,156,239 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A29,111,547 - 29,158,526 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A99,993,738 - 100,014,140 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A100,214,192 - 100,234,941 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A100,214,192 - 100,234,941 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
LYG1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21229,108,787 - 29,156,239 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A29,111,547 - 29,158,526 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A99,993,738 - 100,014,140 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A100,214,192 - 100,234,941 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A100,214,192 - 100,234,941 (-)Ensemblpanpan1.1panPan2
LYG1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38299,284,238 - 99,304,775 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl299,284,238 - 99,304,742 (-)EnsemblGRCh38hg38GRCh38
GRCh37299,900,701 - 99,921,238 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36299,267,133 - 99,284,071 (-)NCBINCBI36Build 36hg18NCBI36
Celera294,105,373 - 94,122,311 (-)NCBICelera
Cytogenetic Map2q11.2NCBI
HuRef293,666,154 - 93,683,093 (-)NCBIHuRef
CHM1_1299,905,527 - 99,922,458 (-)NCBICHM1_1
T2T-CHM13v2.0299,742,858 - 99,763,389 (-)NCBIT2T-CHM13v2.0
Lyg1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39137,985,819 - 37,996,840 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl137,985,817 - 37,996,840 (-)EnsemblGRCm39 Ensembl
GRCm38137,946,738 - 37,957,759 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl137,946,736 - 37,957,759 (-)EnsemblGRCm38mm10GRCm38
MGSCv37138,003,583 - 38,014,604 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36137,891,276 - 37,902,305 (-)NCBIMGSCv36mm8
Celera137,729,312 - 37,740,893 (-)NCBICelera
Cytogenetic Map1BNCBI
cM Map116.29NCBI
Lyg1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8947,666,938 - 47,678,687 (-)NCBIGRCr8
mRatBN7.2940,171,123 - 40,182,869 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl940,171,123 - 40,182,869 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx948,666,912 - 48,678,657 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0953,789,667 - 53,801,416 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0952,071,849 - 52,083,602 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0944,527,596 - 44,539,320 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl944,527,742 - 44,534,041 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl944,605,304 - 44,617,210 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0944,224,976 - 44,236,700 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4936,886,224 - 36,897,973 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera937,924,707 - 37,936,457 (-)NCBICelera
Cytogenetic Map9q21NCBI
Lyg1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554705,563,287 - 5,571,872 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554705,563,298 - 5,571,836 (-)NCBIChiLan1.0ChiLan1.0
LYG1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11043,407,780 - 43,419,610 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1043,408,598 - 43,419,765 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1043,323,582 - 43,359,327 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01044,271,672 - 44,307,204 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1044,280,233 - 44,291,421 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11043,982,501 - 44,018,098 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01044,265,748 - 44,301,230 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01044,449,726 - 44,485,256 (+)NCBIUU_Cfam_GSD_1.0
Lyg1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629285,036,252 - 85,050,487 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366611,527,259 - 1,533,110 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366611,524,677 - 1,533,110 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LOC100522987
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1354,969,575 - 54,975,633 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2357,604,886 - 57,610,944 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LYG1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1142,986,476 - 3,006,837 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl142,986,634 - 3,005,561 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041170,587,589 - 170,599,901 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Lyg1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247494,230,089 - 4,242,362 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247494,229,975 - 4,246,943 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSPPAT00000047182   ⟹   ENSPPAP00000024357
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2A100,214,192 - 100,234,941 (-)Ensembl
RefSeq Acc Id: XM_055107611   ⟹   XP_054963586
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21229,123,747 - 29,156,239 (+)NCBI
NHGRI_mPanPan12A29,128,387 - 29,158,526 (+)NCBI
RefSeq Acc Id: XM_055107612   ⟹   XP_054963587
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21229,108,787 - 29,156,239 (+)NCBI
NHGRI_mPanPan12A29,111,547 - 29,158,526 (+)NCBI
RefSeq Acc Id: XM_063594774   ⟹   XP_063450844
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21229,123,747 - 29,156,239 (+)NCBI
RefSeq Acc Id: XM_063594775   ⟹   XP_063450845
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21229,123,747 - 29,156,239 (+)NCBI
Protein Sequences
Protein RefSeqs XP_054963586 (Get FASTA)   NCBI Sequence Viewer  
  XP_054963587 (Get FASTA)   NCBI Sequence Viewer  
  XP_063450844 (Get FASTA)   NCBI Sequence Viewer  
  XP_063450845 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000024357.1
RefSeq Acc Id: ENSPPAP00000024357   ⟸   ENSPPAT00000047182
RefSeq Acc Id: XP_054963587   ⟸   XM_055107612
- UniProtKB: A0A2R9B453 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054963586   ⟸   XM_055107611
- UniProtKB: A0A2R9B453 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063450844   ⟸   XM_063594774
RefSeq Acc Id: XP_063450845   ⟸   XM_063594775


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000035330 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000047182.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.530.10 UniProtKB/TrEMBL
InterPro Glyco_hydro_23 UniProtKB/TrEMBL
  Lysozyme-like_dom_sf UniProtKB/TrEMBL
NCBI Gene LYG1 ENTREZGENE
PANTHER LYSOZYME G FAMILY MEMBER UniProtKB/TrEMBL
  LYSOZYME G-LIKE PROTEIN 1 UniProtKB/TrEMBL
PIRSF Lysozyme_g UniProtKB/TrEMBL
PRINTS LYSOZYMEG UniProtKB/TrEMBL
Superfamily-SCOP SSF53955 UniProtKB/TrEMBL
UniProt A0A2R9B453 ENTREZGENE, UniProtKB/TrEMBL