RAB3IP (RAB3A interacting protein) - Rat Genome Database
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Gene: RAB3IP (RAB3A interacting protein) Pan paniscus
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Symbol: RAB3IP
Name: RAB3A interacting protein
RGD ID: 11848287
Description: ENCODES a protein that exhibits GTPase binding (ortholog); guanyl-nucleotide exchange factor activity (ortholog); identical protein binding (ortholog); INVOLVED IN cilium assembly (ortholog); negative regulation of filopodium assembly (ortholog); protein localization to organelle (ortholog); PARTICIPATES IN insulin responsive facilitative sugar transporter mediated glucose transport pathway; Rab family mediated signaling pathway; FOUND IN centrosome (ortholog); cytosol (ortholog); Golgi apparatus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: RAB3A interacting protein (rabin3)
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11270,035,629 - 70,107,689 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1270,035,629 - 70,107,689 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01267,265,922 - 67,344,241 (+)NCBIMhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
RAB3IP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11270,035,629 - 70,107,689 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1270,035,629 - 70,107,689 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01267,265,922 - 67,344,241 (+)NCBIMhudiblu_PPA_v0panPan3
RAB3IP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1269,738,681 - 69,823,204 (+)EnsemblGRCh38hg38GRCh38
GRCh38.p13 Ensembl1269,738,860 - 69,823,204 (+)EnsemblGRCh38hg38GRCh38
GRCh381269,738,007 - 69,823,204 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371270,132,640 - 70,216,984 (+)NCBIGRCh37GRCh37hg19GRCh37
GRCh371270,132,466 - 70,216,984 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361268,418,898 - 68,503,251 (+)NCBINCBI36hg18NCBI36
Build 341268,419,454 - 68,495,770NCBI
Celera1269,796,326 - 69,880,688 (+)NCBI
Cytogenetic Map12q15NCBI
HuRef1267,181,822 - 67,267,191 (+)NCBIHuRef
CHM1_11270,100,838 - 70,185,226 (+)NCBICHM1_1
Rab3ip
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3910116,741,685 - 116,786,361 (-)NCBIGRCm39mm39
GRCm3810116,905,780 - 116,950,456 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl10116,905,784 - 116,950,769 (-)EnsemblGRCm38mm10GRCm38
MGSCv3710116,342,840 - 116,387,436 (-)NCBIGRCm37mm9NCBIm37
MGSCv3610116,309,894 - 116,354,490 (-)NCBImm8
Celera10118,848,689 - 118,893,539 (-)NCBICelera
Cytogenetic Map10D2NCBI
cM Map1064.96NCBI
Rab3ip
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2752,531,461 - 52,575,295 (-)NCBI
Rnor_6.0 Ensembl759,928,426 - 59,957,232 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0759,927,486 - 59,971,518 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0759,932,332 - 59,976,359 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4756,229,363 - 56,258,007 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1756,250,358 - 56,278,708 (-)NCBI
Celera749,308,208 - 49,336,852 (-)NCBICelera
Cytogenetic Map7q22NCBI
Rab3ip
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540510,031,666 - 10,090,456 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540510,031,333 - 10,091,438 (+)NCBIChiLan1.0ChiLan1.0
RAB3IP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl1011,673,777 - 11,714,281 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.11011,673,749 - 11,714,282 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Rab3ip
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365457,558,256 - 7,610,178 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RAB3IP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1534,002,792 - 34,053,893 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2536,601,756 - 36,652,151 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103238704
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11165,370,960 - 65,435,097 (+)NCBI
ChlSab1.1 Ensembl1165,371,044 - 65,434,820 (+)Ensembl
Rab3ip
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475028,014,245 - 28,085,967 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000053560   ⟹   ENSPPAP00000030697
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1270,035,629 - 70,107,689 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000053566   ⟹   ENSPPAP00000030703
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1270,036,084 - 70,103,335 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000053574   ⟹   ENSPPAP00000030711
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1270,051,627 - 70,105,762 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000053578   ⟹   ENSPPAP00000030714
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1270,087,328 - 70,105,762 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000053581   ⟹   ENSPPAP00000030717
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1270,090,707 - 70,105,762 (+)Ensembl
RefSeq Acc Id: XM_003808731   ⟹   XP_003808779
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.11270,035,629 - 70,107,689 (+)NCBI
Mhudiblu_PPA_v01267,266,460 - 67,344,241 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008960780   ⟹   XP_008959028
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.11270,035,629 - 70,107,689 (+)NCBI
Mhudiblu_PPA_v01267,266,789 - 67,338,854 (+)NCBI
Sequence:
RefSeq Acc Id: XM_034936219   ⟹   XP_034792110
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v01267,265,922 - 67,344,241 (+)NCBI
Protein Sequences
Protein RefSeqs XP_003808779 (Get FASTA)   NCBI Sequence Viewer  
  XP_008959028 (Get FASTA)   NCBI Sequence Viewer  
  XP_034792110 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_003808779   ⟸   XM_003808731
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_008959028   ⟸   XM_008960780
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_034792110   ⟸   XM_034936219
- Peptide Label: isoform X2
RefSeq Acc Id: ENSPPAP00000030703   ⟸   ENSPPAT00000053566
RefSeq Acc Id: ENSPPAP00000030697   ⟸   ENSPPAT00000053560
RefSeq Acc Id: ENSPPAP00000030714   ⟸   ENSPPAT00000053578
RefSeq Acc Id: ENSPPAP00000030711   ⟸   ENSPPAT00000053574
RefSeq Acc Id: ENSPPAP00000030717   ⟸   ENSPPAT00000053581
Protein Domains
Sec2p


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000038298 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSPPAP00000030697 ENTREZGENE, UniProtKB/TrEMBL
  ENSPPAP00000030703 UniProtKB/TrEMBL
  ENSPPAP00000030711 UniProtKB/TrEMBL
  ENSPPAP00000030714 UniProtKB/TrEMBL
  ENSPPAP00000030717 UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000053560 UniProtKB/TrEMBL
  ENSPPAT00000053566 UniProtKB/TrEMBL
  ENSPPAT00000053574 UniProtKB/TrEMBL
  ENSPPAT00000053578 UniProtKB/TrEMBL
  ENSPPAT00000053581 UniProtKB/TrEMBL
InterPro RAB3IL/RAB3IP/Sec2 UniProtKB/TrEMBL
  Sec2_N UniProtKB/TrEMBL
KEGG Report pps:100973931 UniProtKB/TrEMBL
NCBI Gene RAB3IP ENTREZGENE
PANTHER PTHR14430 UniProtKB/TrEMBL
Pfam Sec2p UniProtKB/TrEMBL
UniProt A0A2R9BM42_PANPA UniProtKB/TrEMBL
  A0A2R9BMW4_PANPA UniProtKB/TrEMBL
  A0A2R9BQJ4_PANPA UniProtKB/TrEMBL
  A0A2R9BQJ9_PANPA UniProtKB/TrEMBL
  A0A2R9BW17_PANPA UniProtKB/TrEMBL