TNFRSF10A (TNF receptor superfamily member 10a) - Rat Genome Database

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Gene: TNFRSF10A (TNF receptor superfamily member 10a) Pan paniscus
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Symbol: TNFRSF10A
Name: TNF receptor superfamily member 10a
RGD ID: 11848222
Description: ENCODES a protein that exhibits identical protein binding (inferred); protease binding (inferred); TRAIL binding (inferred); INVOLVED IN extrinsic apoptotic signaling pathway via death domain receptors (ortholog); male gonad development (ortholog); PARTICIPATES IN Trail mediated signaling pathway; ASSOCIATED WITH adenocarcinoma (ortholog); alopecia (ortholog); anemia (ortholog); FOUND IN plasma membrane raft (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: tumor necrosis factor receptor superfamily member 10A
RGD Orthologs
Human
Mouse
Rat
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2741,692,326 - 41,732,181 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1817,422,892 - 17,459,408 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0822,440,502 - 22,476,790 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1819,378,547 - 19,414,724 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl819,378,547 - 19,414,724 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
TNFRSF10A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2741,692,326 - 41,732,181 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1817,422,892 - 17,459,408 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0822,440,502 - 22,476,790 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1819,378,547 - 19,414,724 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl819,378,547 - 19,414,724 (-)Ensemblpanpan1.1panPan2
TNFRSF10A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38823,190,452 - 23,225,102 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl823,190,452 - 23,225,102 (-)EnsemblGRCh38hg38GRCh38
GRCh37823,047,965 - 23,082,615 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36823,104,915 - 23,138,584 (-)NCBINCBI36Build 36hg18NCBI36
Build 34823,104,915 - 23,138,584NCBI
Celera822,011,569 - 22,045,255 (-)NCBICelera
Cytogenetic Map8p21.3NCBI
HuRef821,594,946 - 21,628,637 (-)NCBIHuRef
CHM1_1823,251,086 - 23,284,807 (-)NCBICHM1_1
T2T-CHM13v2.0823,465,337 - 23,499,970 (-)NCBIT2T-CHM13v2.0
Tnfrsf10b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391470,004,921 - 70,021,860 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1470,004,921 - 70,021,860 (+)EnsemblGRCm39 Ensembl
GRCm381469,767,472 - 69,784,411 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1469,767,472 - 69,784,411 (+)EnsemblGRCm38mm10GRCm38
MGSCv371470,167,279 - 70,184,218 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361468,502,609 - 68,519,491 (+)NCBIMGSCv36mm8
Celera1467,301,078 - 67,318,034 (+)NCBICelera
Cytogenetic Map14D2NCBI
cM Map1436.1NCBI
Tnfrsf10b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81551,249,883 - 51,278,091 (+)NCBIGRCr8
mRatBN7.21544,840,386 - 44,868,318 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1544,840,386 - 44,867,467 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1548,958,259 - 48,986,200 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01550,069,754 - 50,097,693 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01546,929,101 - 46,957,032 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01551,433,853 - 51,464,215 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01555,161,595 - 55,192,095 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41550,138,439 - 50,163,254 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11550,155,031 - 50,177,989 (+)NCBI
Celera1544,522,716 - 44,548,374 (+)NCBICelera
Cytogenetic Map15p11NCBI
LOC100737977
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1147,344,788 - 7,371,086 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2147,869,520 - 7,886,618 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TNFRSF10A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1821,318,987 - 21,351,641 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl821,315,149 - 21,351,673 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605220,871,352 - 20,907,523 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003823580 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSPPAT00000059281   ⟹   ENSPPAP00000036389
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl819,378,547 - 19,414,724 (-)Ensembl
Ensembl Acc Id: ENSPPAT00000059289   ⟹   ENSPPAP00000036397
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl819,379,697 - 19,414,317 (-)Ensembl
Ensembl Acc Id: ENSPPAT00000059292   ⟹   ENSPPAP00000036400
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl819,379,697 - 19,391,495 (-)Ensembl
RefSeq Acc Id: XM_003823580   ⟹   XP_003823628
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2741,692,326 - 41,732,181 (-)NCBI
NHGRI_mPanPan1817,422,892 - 17,459,408 (-)NCBI
Mhudiblu_PPA_v0822,440,502 - 22,476,790 (-)NCBI
PanPan1.1819,378,547 - 19,414,724 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003823628 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000036389.1
  ENSPPAP00000036397.1
  ENSPPAP00000036400.1
RefSeq Acc Id: XP_003823628   ⟸   XM_003823580
- UniProtKB: A0A2R9C3Q3 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSPPAP00000036400   ⟸   ENSPPAT00000059292
Ensembl Acc Id: ENSPPAP00000036397   ⟸   ENSPPAT00000059289
Ensembl Acc Id: ENSPPAP00000036389   ⟸   ENSPPAT00000059281
Protein Domains
Death   TNFR-Cys


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000040961 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000059281.1 UniProtKB/TrEMBL
  ENSPPAT00000059289.1 UniProtKB/TrEMBL
  ENSPPAT00000059292.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.533.10 UniProtKB/TrEMBL
  Tumor Necrosis Factor Receptor, subunit A, domain 2 UniProtKB/TrEMBL
InterPro DEATH-like_dom_sf UniProtKB/TrEMBL
  Death_domain UniProtKB/TrEMBL
  TNFR/NGFR_Cys_rich_reg UniProtKB/TrEMBL
  TNFR_10 UniProtKB/TrEMBL
  TNFRSF10 UniProtKB/TrEMBL
  TNFRSF10_N UniProtKB/TrEMBL
  TNFRSF10A/B_death UniProtKB/TrEMBL
KEGG Report pps:100971044 UniProtKB/TrEMBL
NCBI Gene TNFRSF10A ENTREZGENE
PANTHER TUMOR NECROSIS FACTOR RECEPTOR SUPERFAMILY MEMBER 10A UniProtKB/TrEMBL
  TUMOR NECROSIS FACTOR RECEPTOR SUPERFAMILY MEMBER 10B UniProtKB/TrEMBL
Pfam Death UniProtKB/TrEMBL
  TNFR_c6 UniProtKB/TrEMBL
PIRSF CD261_antigen UniProtKB/TrEMBL
PRINTS TNFACTORR10 UniProtKB/TrEMBL
PROSITE DEATH_DOMAIN UniProtKB/TrEMBL
  TNFR_NGFR_1 UniProtKB/TrEMBL
  TNFR_NGFR_2 UniProtKB/TrEMBL
SMART DEATH UniProtKB/TrEMBL
  TNFR UniProtKB/TrEMBL
Superfamily-SCOP SSF47986 UniProtKB/TrEMBL
  TNF receptor-like UniProtKB/TrEMBL
UniProt A0A2R9C385_PANPA UniProtKB/TrEMBL
  A0A2R9C3Q3 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9CDJ5_PANPA UniProtKB/TrEMBL