CTCFL (CCCTC-binding factor like)

Gene: CTCFL (CCCTC-binding factor like) Pan paniscus

Analyze

Symbol:

CTCFL

Name:

CCCTC-binding factor like

RGD ID:

11847536

Description:

ENCODES a protein that exhibits DNA binding (inferred); DNA-binding transcription activator activity, RNA polymerase II-specific (inferred); DNA-binding transcription factor activity (inferred); INVOLVED IN establishment of protein localization to chromatin (inferred); genomic imprinting (inferred); positive regulation of DNA-templated transcription (inferred); ASSOCIATED WITH genetic disease (ortholog); FOUND IN cytoplasm (inferred); cytosol (inferred); nuclear body (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

transcriptional repressor CTCFL; transcriptional repressor CTCFL-like

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	21	63,247,466 - 63,276,826 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	20	63,240,585 - 63,269,945 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	20	53,836,295 - 53,865,974 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	20	55,115,325 - 55,143,717 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	20	55,114,405 - 55,143,717 (-)	Ensembl	panpan1.1		panPan2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

establishment of protein localization to chromatin (IEA)

genomic imprinting (IEA)

positive regulation of DNA-templated transcription (IEA)

positive regulation of gene expression (IEA)

positive regulation of transcription by RNA polymerase II (IEA)

regulation of DNA-templated transcription (IEA)

regulation of transcription by RNA polymerase II (IEA)

transcription initiation-coupled chromatin remodeling (IEA)

Cellular Component

cytoplasm (IEA)

cytosol (IEA)

nuclear body (IEA)

nucleoplasm (IEA)

nucleus (IEA)

Molecular Function

DNA binding (IEA)

DNA-binding transcription activator activity, RNA polymerase II-specific (IEA)

DNA-binding transcription factor activity (IEA)

DNA-binding transcription factor activity, RNA polymerase II-specific (IEA)

histone binding (IEA)

metal ion binding (IEA)

protein binding (ISO)

RNA polymerase II cis-regulatory region sequence-specific DNA binding (IEA)

sequence-specific DNA binding (IEA)

transcription cis-regulatory region binding (IEA)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

CTCFL
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	21	63,247,466 - 63,276,826 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	20	63,240,585 - 63,269,945 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	20	53,836,295 - 53,865,974 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	20	55,115,325 - 55,143,717 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	20	55,114,405 - 55,143,717 (-)	Ensembl	panpan1.1		panPan2

CTCFL
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	20	57,495,965 - 57,525,652 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	20	57,495,966 - 57,525,652 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	20	56,071,021 - 56,100,708 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	20	55,505,630 - 55,533,560 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	20	55,505,629 - 55,533,560	NCBI
Celera	20	52,812,617 - 52,840,546 (-)	NCBI		Celera
Cytogenetic Map	20	q13.31	NCBI
HuRef	20	52,852,627 - 52,882,314 (-)	NCBI		HuRef
CHM1_1	20	55,972,071 - 56,001,746 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	20	59,273,778 - 59,303,467 (-)	NCBI		T2T-CHM13v2.0

Ctcfl
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	172,935,402 - 172,961,318 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	172,935,402 - 172,961,318 (-)	Ensembl		GRCm39 Ensembl
GRCm38	2	173,093,609 - 173,119,525 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	173,093,609 - 173,119,525 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	172,919,110 - 172,945,026 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	172,736,548 - 172,762,464 (-)	NCBI		MGSCv36	mm8
Celera	2	179,059,119 - 179,084,765 (-)	NCBI		Celera
Cytogenetic Map	2	H3	NCBI
cM Map	2	95.74	NCBI

Ctcfl1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	182,286,637 - 182,309,272 (-)	NCBI		GRCr8
mRatBN7.2	3	161,868,306 - 161,890,949 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	161,868,306 - 161,890,949 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	165,672,283 - 165,695,002 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	174,171,233 - 174,193,953 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	171,913,055 - 171,935,769 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	171,145,203 - 171,168,375 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	171,145,584 - 171,166,454 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	177,211,373 - 177,233,853 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	163,952,971 - 163,973,834 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	3	163,857,327 - 163,914,593 (-)	NCBI
Celera	3	161,061,586 - 161,084,222 (-)	NCBI		Celera
Cytogenetic Map	3	q42	NCBI

Ctcfl
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955445	1,944,789 - 1,970,484 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955445	1,944,845 - 1,969,502 (+)	NCBI	ChiLan1.0	ChiLan1.0

CTCFL
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	24	42,477,029 - 42,507,217 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	24	42,477,342 - 42,507,225 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	24	41,724,185 - 41,754,347 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	24	43,342,428 - 43,372,548 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	24	43,342,729 - 43,372,545 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	24	42,426,987 - 42,457,178 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	24	42,566,848 - 42,596,982 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	24	43,225,081 - 43,255,079 (-)	NCBI		UU_Cfam_GSD_1.0

Ctcfl
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	182,970,292 - 182,993,625 (+)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936530	312,630 - 335,929 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CTCFL
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	17	57,860,787 - 57,891,924 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	17	57,860,231 - 57,891,094 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	17	65,024,460 - 65,055,353 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CTCFL
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	2	6,592,924 - 6,623,787 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666050	54,651,624 - 54,682,401 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ctcfl
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624741	23,925,326 - 23,948,819 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624741	23,924,124 - 23,948,849 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003806164	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_003806165	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008950699	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034947144	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034947145	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034947146	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034947147	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034947148	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_055104600	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_055104601	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JARIFH020000021	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSPPAT00000040031 ⟹ ENSPPAP00000017329

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	20	55,114,405 - 55,142,594 (-)	Ensembl

RefSeq Acc Id:

ENSPPAT00000040036 ⟹ ENSPPAP00000017334

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	20	55,115,325 - 55,143,717 (-)	Ensembl

RefSeq Acc Id:

ENSPPAT00000040044 ⟹ ENSPPAP00000017342

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	20	55,115,325 - 55,143,595 (-)	Ensembl

RefSeq Acc Id:

ENSPPAT00000040055 ⟹ ENSPPAP00000017353

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	20	55,117,702 - 55,143,253 (-)	Ensembl

RefSeq Acc Id:

ENSPPAT00000040069 ⟹ ENSPPAP00000017366

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	20	55,125,125 - 55,143,493 (-)	Ensembl

RefSeq Acc Id:

ENSPPAT00000040079 ⟹ ENSPPAP00000017376

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	20	55,125,125 - 55,143,493 (-)	Ensembl

RefSeq Acc Id:

ENSPPAT00000040081 ⟹ ENSPPAP00000017378

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	20	55,125,125 - 55,143,253 (-)	Ensembl

RefSeq Acc Id:

ENSPPAT00000040084 ⟹ ENSPPAP00000017380

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	20	55,125,990 - 55,142,594 (-)	Ensembl

RefSeq Acc Id:

ENSPPAT00000040087 ⟹ ENSPPAP00000017383

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	20	55,126,203 - 55,142,594 (-)	Ensembl

RefSeq Acc Id:

XM_003806164 ⟹ XP_003806212

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	21	63,247,466 - 63,276,650 (-)	NCBI
NHGRI_mPanPan1	20	63,240,585 - 63,269,769 (-)	NCBI
Mhudiblu_PPA_v0	20	53,837,343 - 53,865,513 (-)	NCBI
PanPan1.1	20	55,115,325 - 55,143,595 (-)	NCBI

Sequence:

show sequence

GCCTGGCTCCGCCCCCTTCACGCCCCCTCTTTTCCGCTCCGCGCCTGCGCACTGCCACCCTCCA
CTCTCGCGCCAGCCCTGCGGCGGCCGGCTGTGGGCTGCAGCACGCGGTGCACGAGGCAGAGCCC
ACAAGCGAAAGACGGAGTGGGCCGGGCATTCCGGCCCCGCCTTCCGCGGCCAAGTCATTATGGC
AGCCACTGAGATCTCTGTCCTTTCTGAGCAATTCACCAAAATCAAAGAACTCGAGTTGATGCCG
GAAAAAGGCCTGAAGGAGGAGGAAAAAGACGGAGTGTGCAGAGAGAAAGACCATCGGAGCCCTA
GTGAGTTGGAGGCCGAGCGTACCTCTGGGGCCTTCCAGGACAGCGTCCTGGAGGAAGAAGTGGA
GCTGGTGCTGGCCCCCTCGGAGGAGAGCGAGAAACACATCCTGACCCTGCAGACGGTGCACTTC
ACTTCTGAAGCTGTGGAGTTGCAGGATATGAGCTTGCTGAGCATACAGCAGCAAGAAGGGGTGC
AGGTGGTGGTGCAGCAGCCTGGCCCTGGGTTGCTGTGGCTTGAGGAAGGGCCCCGGCAGAGCCT
GCAGCAGTATGCGGCCATTGGTATCCAGCAAGAGCTGTACTCCCTGCAAGAGATAGAGGTGTTA
CAGTTCCACGCTCTAGAGGAGAATGTGATGGTGGCCAGTGAAGACAGTAAGTTAGCAGTGAGCC
TGGCTGAAACTGCTGGACTGATCAAGGTCGAGGAAGGGCAGGAGAAGAACCAGTTATTGGCTGA
AAGAACAAAGGAGCAGCTCTTTTTTGTGGAAACAATGTCAGGAGATGAAAGAAGTGACGAAATT
GTTCTCACAGTTTCAAATTCAAATGTGGAAGAACAAGAGGATCAACCTACAGCTGGTCAAGCAG
ATGCTGAAAAGGCCAGATCTACAAAAAATCAAAGAAAGACAAAGGGAGCAAAACAAACCTTCCA
CTGTGATGTCTGCATGTTCACCTCTTCTAGAATGTCGAGTTTTAATCGTCATATGAAAACTCAC
ACCAATGAGAAGCCTCACCTGTGTCACCTCTGCCTGAAAACCTTCCGTACGGTCACTCTGCTGC
GGAACCATGTTAACACCCACACAGGAACCAGGCCTTACAAGTGTAACGACTGCAACATGGCATT
TGTCACCAGTGGAGAACTCGTCCGACACACGCGCTATAAACATACTCATGAGAAACCCTTTAAA
TGTTCCATGTGCAAGTATGCCAGTGTGGAGGCAAGTAAATTGAAGCGCCATGTCCGATCCCACA
CTGGGGAGCGCCCCTTTCAGTGTTGCCAGTGCAGCTATGCCAGCAGAGACACCTACAAGCTGAA
ACGCCACATGAGAACGCACTCAGGTGAGAAGCCTTACGAATGCCACATCTGCCACACCCGCTTC
ACCCAGAGCGGGACCATGAAAATACATATTCTGCAGAAACATGGCGAAAATGTCCCCAAATACC
AGTGTCCCCATTGTGCCACCATCATTGCACGGAAAAGCGACCTACGTGTGCATATGCGCAACTT
GCATGCTTACAGCGCTGCAGAGCTGAAATGCCGCTACTGTCCTGCTGTCTTCCATGAACGCTAT
GCCCTCATTCAGCACCAGAAAACTCATAAAAATGAGAAGAGGTTCAAGTGCAAACACTGCAGTT
ATGCCTGCAAGCAGGAACGTCATATGACCGCTCACATTCGTACCCACACTGGAGAGAAACCATT
CACCTGCCTTTCTTGCAATAAATGTTTCCGACAGAAGCAACTTCTAAACGCTCACTTCAGGAAA
TACCACGATGCAAATTTCGTCCCGACTGTTTACAAATGCTCCAAGTGTGGCAAAGGCTTTTCCC
GCTGGATTAACCTGCACAGACATTCGGAGAAGTGTGGATCAGGGGAAGCAAAGTCGGCTGCTTC
AGGAAAAGGAAGAAGAACAAGAAAGAGGAAGCAGACCATCCTGAAGGAAGCCACAAAGGGTCAG
AAGGAAGCTGCGAACGGAGACGAAGCTGCTGCTGAGGAGGCTTCCACCACGAAGGGAGAACAGT
TCCCAGGAGAGATGTTTCCTGTCGCCTGCAGAGAAACCACAGCCAGAGTCAAAGAGGAAGTGGA
TGAAGGCGTGACCTGTGAAATGCTCCTCAACATGATGGATAAGTGAGAGGGATTCGGGTTGCAC
GTTCACTGCCCCCAATTCCTAAAGCAAGTTAGAAGTTTTGAGCATTTAAGGTGTGAAATGCTCC
TCAACACGATGGATAAGTGAGAGAGAGTCAGGTTGCATGTTCACTGCCCCTAATTCCTAAAGCA
AGTTAGAAATTTTTAGCATTTTCTTTGAAACAATTAAGTTCATGACAATGGATGACACAAGTTT
GAGGTAGTGTCTAGAATTGTTCTCCTGTTTGTAGCTGGATATTTCAAAGAAACATTGCAGGTAT
TTTATAAAAGTTTTAAACCTTGAATGAGAGGGTAACACCTCAAACCTATGGATTCATTCACTTG
ATATTGGCAAGGTGGCCCACAATGAGTGAGTAGTGATTTTTGGATATTTCAAAATAGTCTAGAC
CAGCTAGTGCTTCCACAGTCAAAGCTGGACATTTTTATGTTGCATTATATACACCCATGATATT
TCTAATAATATATGGTTTTAAACATTAAACACAAATGTTTTTATACAAATGAATTTTCTACAAA
ATTTAAAGCTACCATAATGCTTTTAATTAGTTCTAAATTCAACCAAAAATGTTTTACTCTTATA
AAAAGGAAAACTGAGTAGGAAATGAAATACTAGATTAGACTAGAAAATAAGGAATAAATCGATT
TTACTTTGGTATAGGAGCAAGGTTCACCTTTAGATTTTTGTATTCTCTTTTAATTATGCTCCTT
GGCAGGTATGAAATTGCCCTGGTTACATTCCATTATTGCTTATTAGTATTTCACTCCATAACCC
TTTTTTCTGCTAAAACTACTCTTCTTATATTTTTAAAATAATTGGCAGAGTGAGAAGAAACATA
AAATCAAATAAGGCAAATGTGTACCTGTAAGGAATTTGTACTTTTTCATAATGCCCAGTGATTA
GTGAGTATTTCCCTTTTGCCAGTTGACAAGATTTTTCCACCCTCGAGCAGCATGAGAGATGCCT
CTTTAACACTTGAAATTAATTTCTATCTGTATACAGAGCCAGATTTTTCTTCATTGCTTAGTTG
AGCAGTTTGTTTTGCTGCCAACCTGTCTCCACTCCTGTATTTCAAGATCATTGATAAGCCCTAA
ATTCAAATTCTTAAGATATGGACCTTTTATTGAAAATATCACAAGTTCAGAATCCCTATACAAT
GTGAATATGTAGAAATAATTTCCCAGCAGGAAGAGCATTATATTCTCTTTGTACCAGCAAATTA
ATTCAACTCAACTCACATGAGATTTAAATTCTGTGGGCTGTAGTATGCCATCATTGTGACTGAA
TTTGTGCAATGGTTTCTTAATTTTTTTACTGTTATTTAAAGATGTTTTACATAATTCAATAAAA
TGAAATGACCTAAAATTGC

hide sequence

RefSeq Acc Id:

XM_003806165 ⟹ XP_003806213

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	21	63,247,466 - 63,276,826 (-)	NCBI
NHGRI_mPanPan1	20	63,240,585 - 63,269,945 (-)	NCBI
Mhudiblu_PPA_v0	20	53,837,343 - 53,865,974 (-)	NCBI
PanPan1.1	20	55,115,325 - 55,143,717 (-)	NCBI

Sequence:

show sequence

CTCATCCACCCCCCCAGGTCCACCAGTGCCGCCTGCGGGGTCCTCCTCATCCGTGCTCCCCCTC
CCCCTCCCTACTCCCCTTCCCCCCTGCCCCCACAGTACATCACCCCTCCCCCAACCCTGCCTGG
CTCCGCCCCCTTCACGCCCCCTCTTTTCCGCTCCGCGCCTGCGCACTGCCACCCTCCACTCTCG
CGCCAGCCCTGCGGCGGCCGGCTGTGGGCTGCAGCACGCGGTGCACGAGGCAGAGCCCACAAGC
GAAAGACGGAGTGGGCCGGGCATTCCGGCCCCGCCTTCCGCGGCCAAGTCATTATGGCAGCCAC
TGAGATCTCTGTCCTTTCTGAGCAATTCACCAAAATCAAAGAACTCGAGTTGATGCCGGAAAAA
GGCCTGAAGGAGGAGGAAAAAGACGGAGTGTGCAGAGAGAAAGACCATCGGAGCCCTAGTGAGT
TGGAGGCCGAGCGTACCTCTGGGGCCTTCCAGGACAGCGTCCTGGAGGAAGAAGTGGAGCTGGT
GCTGGCCCCCTCGGAGGAGAGCGAGAAACACATCCTGACCCTGCAGACGGTGCACTTCACTTCT
GAAGCTGTGGAGTTGCAGGATATGAGCTTGCTGAGCATACAGCAGCAAGAAGGGGTGCAGGTGG
TGGTGCAGCAGCCTGGCCCTGGGTTGCTGTGGCTTGAGGAAGGGCCCCGGCAGAGCCTGCAGCA
GTATGCGGCCATTGGTATCCAGCAAGAGCTGTACTCCCTGCAAGAGATAGAGGTGTTACAGTTC
CACGCTCTAGAGGAGAATGTGATGGTGGCCAGTGAAGACAGTAAGTTAGCAGTGAGCCTGGCTG
AAACTGCTGGACTGATCAAGGTCGAGGAAGGGCAGGAGAAGAACCAGTTATTGGCTGAAAGAAC
AAAGGAGCAGCTCTTTTTTGTGGAAACAATGTCAGGAGATGAAAGAAGTGACGAAATTGTTCTC
ACAGTTTCAAATTCAAATGTGGAAGAACAAGAGGATCAACCTACAGCTGGTCAAGCAGATGCTG
AAAAGGCCAGATCTACAAAAAATCAAAGAAAGACAAAGGGAGCAAAACAAACCTTCCACTGTGA
TGTCTGCATGTTCACCTCTTCTAGAATGTCGAGTTTTAATCGTCATATGAAAACTCACACCAAT
GAGAAGCCTCACCTGTGTCACCTCTGCCTGAAAACCTTCCGTACGGTCACTCTGCTGCGGAACC
ATGTTAACACCCACACAGGAACCAGGCCTTACAAGTGTAACGACTGCAACATGGCATTTGTCAC
CAGTGGAGAACTCGTCCGACACACGCGCTATAAACATACTCATGAGAAACCCTTTAAATGTTCC
ATGTGCAAGTATGCCAGTGTGGAGGCAAGTAAATTGAAGCGCCATGTCCGATCCCACACTGGGG
AGCGCCCCTTTCAGTGTTGCCAGTGCAGCTATGCCAGCAGAGACACCTACAAGCTGAAACGCCA
CATGAGAACGCACTCAGGTGTGCATATGCGCAACTTGCATGCTTACAGCGCTGCAGAGCTGAAA
TGCCGCTACTGTCCTGCTGTCTTCCATGAACGCTATGCCCTCATTCAGCACCAGAAAACTCATA
AAAATGAGAAGAGGTTCAAGTGCAAACACTGCAGTTATGCCTGCAAGCAGGAACGTCATATGAC
CGCTCACATTCGTACCCACACTGGAGAGAAACCATTCACCTGCCTTTCTTGCAATAAATGTTTC
CGACAGAAGCAACTTCTAAACGCTCACTTCAGGAAATACCACGATGCAAATTTCGTCCCGACTG
TTTACAAATGCTCCAAGTGTGGCAAAGGCTTTTCCCGCTGGATTAACCTGCACAGACATTCGGA
GAAGTGTGGATCAGGGGAAGCAAAGTCGGCTGCTTCAGGAAAAGGAAGAAGAACAAGAAAGAGG
AAGCAGACCATCCTGAAGGAAGCCACAAAGGGTCAGAAGGAAGCTGCGAACGGAGACGAAGCTG
CTGCTGAGGAGGCTTCCACCACGAAGGGAGAACAGTTCCCAGGAGAGATGTTTCCTGTCGCCTG
CAGAGAAACCACAGCCAGAGTCAAAGAGGAAGTGGATGAAGGCGTGACCTGTGAAATGCTCCTC
AACATGATGGATAAGTGAGAGGGATTCGGGTTGCACGTTCACTGCCCCCAATTCCTAAAGCAAG
TTAGAAGTTTTGAGCATTTAAGGTGTGAAATGCTCCTCAACACGATGGATAAGTGAGAGAGAGT
CAGGTTGCATGTTCACTGCCCCTAATTCCTAAAGCAAGTTAGAAATTTTTAGCATTTTCTTTGA
AACAATTAAGTTCATGACAATGGATGACACAAGTTTGAGGTAGTGTCTAGAATTGTTCTCCTGT
TTGTAGCTGGATATTTCAAAGAAACATTGCAGGTATTTTATAAAAGTTTTAAACCTTGAATGAG
AGGGTAACACCTCAAACCTATGGATTCATTCACTTGATATTGGCAAGGTGGCCCACAATGAGTG
AGTAGTGATTTTTGGATATTTCAAAATAGTCTAGACCAGCTAGTGCTTCCACAGTCAAAGCTGG
ACATTTTTATGTTGCATTATATACACCCATGATATTTCTAATAATATATGGTTTTAAACATTAA
ACACAAATGTTTTTATACAAATGAATTTTCTACAAAATTTAAAGCTACCATAATGCTTTTAATT
AGTTCTAAATTCAACCAAAAATGTTTTACTCTTATAAAAAGGAAAACTGAGTAGGAAATGAAAT
ACTAGATTAGACTAGAAAATAAGGAATAAATCGATTTTACTTTGGTATAGGAGCAAGGTTCACC
TTTAGATTTTTGTATTCTCTTTTAATTATGCTCCTTGGCAGGTATGAAATTGCCCTGGTTACAT
TCCATTATTGCTTATTAGTATTTCACTCCATAACCCTTTTTTCTGCTAAAACTACTCTTCTTAT
ATTTTTAAAATAATTGGCAGAGTGAGAAGAAACATAAAATCAAATAAGGCAAATGTGTACCTGT
AAGGAATTTGTACTTTTTCATAATGCCCAGTGATTAGTGAGTATTTCCCTTTTGCCAGTTGACA
AGATTTTTCCACCCTCGAGCAGCATGAGAGATGCCTCTTTAACACTTGAAATTAATTTCTATCT
GTATACAGAGCCAGATTTTTCTTCATTGCTTAGTTGAGCAGTTTGTTTTGCTGCCAACCTGTCT
CCACTCCTGTATTTCAAGATCATTGATAAGCCCTAAATTCAAATTCTTAAGATATGGACCTTTT
ATTGAAAATATCACAAGTTCAGAATCCCTATACAATGTGAATATGTAGAAATAATTTCCCAGCA
GGAAGAGCATTATATTCTCTTTGTACCAGCAAATTAATTCAACTCAACTCACATGAGATTTAAA
TTCTGTGGGCTGTAGTATGCCATCATTGTGACTGAATTTGTGCAATGGTTTCTTAATTTTTTTA
CTGTTATTTAAAGATGTTTTACATAATTCAATAAAATGAAATGACCTAAAATTGC

hide sequence

RefSeq Acc Id:

XM_034947144 ⟹ XP_034803035

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	21	63,247,466 - 63,276,317 (-)	NCBI
NHGRI_mPanPan1	20	63,240,585 - 63,269,436 (-)	NCBI
Mhudiblu_PPA_v0	20	53,843,368 - 53,865,419 (-)	NCBI

RefSeq Acc Id:

XM_055104600 ⟹ XP_054960575

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	21	63,257,587 - 63,276,317 (-)	NCBI
NHGRI_mPanPan1	20	63,250,706 - 63,269,436 (-)	NCBI

RefSeq Acc Id:

XM_055104601 ⟹ XP_054960576

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	21	63,247,466 - 63,276,317 (-)	NCBI
NHGRI_mPanPan1	20	63,240,585 - 63,269,436 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_003806212	(Get FASTA)	NCBI Sequence Viewer
	XP_003806213	(Get FASTA)	NCBI Sequence Viewer
	XP_034803035	(Get FASTA)	NCBI Sequence Viewer
	XP_054960575	(Get FASTA)	NCBI Sequence Viewer
	XP_054960576	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSPPAP00000017329.1
	ENSPPAP00000017334.1
	ENSPPAP00000017342.1
	ENSPPAP00000017353.1
	ENSPPAP00000017366.1
	ENSPPAP00000017376.1
	ENSPPAP00000017378.1
	ENSPPAP00000017380.1
	ENSPPAP00000017383.1

RefSeq Acc Id:	XP_003806213 ⟸ XM_003806165
- Peptide Label:	isoform X4
- UniProtKB:	A0A2R9AR22 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAATEISVLSEQFTKIKELELMPEKGLKEEEKDGVCREKDHRSPSELEAERTSGAFQDSVLEEE VELVLAPSEESEKHILTLQTVHFTSEAVELQDMSLLSIQQQEGVQVVVQQPGPGLLWLEEGPRQ SLQQYAAIGIQQELYSLQEIEVLQFHALEENVMVASEDSKLAVSLAETAGLIKVEEGQEKNQLL AERTKEQLFFVETMSGDERSDEIVLTVSNSNVEEQEDQPTAGQADAEKARSTKNQRKTKGAKQT FHCDVCMFTSSRMSSFNRHMKTHTNEKPHLCHLCLKTFRTVTLLRNHVNTHTGTRPYKCNDCNM AFVTSGELVRHTRYKHTHEKPFKCSMCKYASVEASKLKRHVRSHTGERPFQCCQCSYASRDTYK LKRHMRTHSGVHMRNLHAYSAAELKCRYCPAVFHERYALIQHQKTHKNEKRFKCKHCSYACKQE RHMTAHIRTHTGEKPFTCLSCNKCFRQKQLLNAHFRKYHDANFVPTVYKCSKCGKGFSRWINLH RHSEKCGSGEAKSAASGKGRRTRKRKQTILKEATKGQKEAANGDEAAAEEASTTKGEQFPGEMF PVACRETTARVKEEVDEGVTCEMLLNMMDK hide sequence

RefSeq Acc Id:	XP_003806212 ⟸ XM_003806164
- Peptide Label:	isoform X1
- UniProtKB:	A0A2R9AIZ8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAATEISVLSEQFTKIKELELMPEKGLKEEEKDGVCREKDHRSPSELEAERTSGAFQDSVLEEE VELVLAPSEESEKHILTLQTVHFTSEAVELQDMSLLSIQQQEGVQVVVQQPGPGLLWLEEGPRQ SLQQYAAIGIQQELYSLQEIEVLQFHALEENVMVASEDSKLAVSLAETAGLIKVEEGQEKNQLL AERTKEQLFFVETMSGDERSDEIVLTVSNSNVEEQEDQPTAGQADAEKARSTKNQRKTKGAKQT FHCDVCMFTSSRMSSFNRHMKTHTNEKPHLCHLCLKTFRTVTLLRNHVNTHTGTRPYKCNDCNM AFVTSGELVRHTRYKHTHEKPFKCSMCKYASVEASKLKRHVRSHTGERPFQCCQCSYASRDTYK LKRHMRTHSGEKPYECHICHTRFTQSGTMKIHILQKHGENVPKYQCPHCATIIARKSDLRVHMR NLHAYSAAELKCRYCPAVFHERYALIQHQKTHKNEKRFKCKHCSYACKQERHMTAHIRTHTGEK PFTCLSCNKCFRQKQLLNAHFRKYHDANFVPTVYKCSKCGKGFSRWINLHRHSEKCGSGEAKSA ASGKGRRTRKRKQTILKEATKGQKEAANGDEAAAEEASTTKGEQFPGEMFPVACRETTARVKEE VDEGVTCEMLLNMMDK hide sequence

RefSeq Acc Id:	XP_034803035 ⟸ XM_034947144
- Peptide Label:	isoform X2

RefSeq Acc Id:

ENSPPAP00000017342 ⟸ ENSPPAT00000040044

RefSeq Acc Id:

ENSPPAP00000017353 ⟸ ENSPPAT00000040055

RefSeq Acc Id:

ENSPPAP00000017366 ⟸ ENSPPAT00000040069

RefSeq Acc Id:

ENSPPAP00000017376 ⟸ ENSPPAT00000040079

RefSeq Acc Id:

ENSPPAP00000017334 ⟸ ENSPPAT00000040036

RefSeq Acc Id:

ENSPPAP00000017329 ⟸ ENSPPAT00000040031

RefSeq Acc Id:

ENSPPAP00000017378 ⟸ ENSPPAT00000040081

RefSeq Acc Id:

ENSPPAP00000017380 ⟸ ENSPPAT00000040084

RefSeq Acc Id:

ENSPPAP00000017383 ⟸ ENSPPAT00000040087

RefSeq Acc Id:	XP_054960576 ⟸ XM_055104601
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_054960575 ⟸ XM_055104600
- Peptide Label:	isoform X3
- UniProtKB:	A0A2R9ANU9 (UniProtKB/TrEMBL)

Protein Domains

C2H2-type

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSPPAG00000031741	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSPPAT00000040031.1	UniProtKB/TrEMBL
	ENSPPAT00000040036.1	UniProtKB/TrEMBL
	ENSPPAT00000040044.1	UniProtKB/TrEMBL
	ENSPPAT00000040055.1	UniProtKB/TrEMBL
	ENSPPAT00000040069.1	UniProtKB/TrEMBL
	ENSPPAT00000040079.1	UniProtKB/TrEMBL
	ENSPPAT00000040081.1	UniProtKB/TrEMBL
	ENSPPAT00000040084.1	UniProtKB/TrEMBL
	ENSPPAT00000040087.1	UniProtKB/TrEMBL
Gene3D-CATH	Classic Zinc Finger	UniProtKB/TrEMBL
InterPro	Znf_C2H2_sf	UniProtKB/TrEMBL
	Znf_C2H2_type	UniProtKB/TrEMBL
KEGG Report	pps:100981571	UniProtKB/TrEMBL
NCBI Gene	CTCFL	ENTREZGENE
PANTHER	COMBGAP, ISOFORM L-RELATED	UniProtKB/TrEMBL
	IP01201P-RELATED	UniProtKB/TrEMBL
	KRAB DOMAIN C2H2 ZINC FINGER	UniProtKB/TrEMBL
	KRAB DOMAIN-CONTAINING PROTEIN	UniProtKB/TrEMBL
	LINKING IMMUNITY AND METABOLISM-RELATED	UniProtKB/TrEMBL
	ZINC FINGER AND BTB DOMAIN-CONTAINING PROTEIN 24	UniProtKB/TrEMBL
	ZINC FINGER PROTEIN	UniProtKB/TrEMBL
	ZINC FINGER PROTEIN	UniProtKB/TrEMBL
	ZINC FINGER PROTEIN	UniProtKB/TrEMBL
	ZINC FINGER PROTEIN	UniProtKB/TrEMBL
Pfam	zf-C2H2	UniProtKB/TrEMBL
	zf-C2H2_4	UniProtKB/TrEMBL
PROSITE	ZINC_FINGER_C2H2_1	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_2	UniProtKB/TrEMBL
SMART	ZnF_C2H2	UniProtKB/TrEMBL
Superfamily-SCOP	SSF57667	UniProtKB/TrEMBL
UniProt	A0A2R9AIZ8	ENTREZGENE, UniProtKB/TrEMBL
	A0A2R9AJ17_PANPA	UniProtKB/TrEMBL
	A0A2R9AJ24_PANPA	UniProtKB/TrEMBL
	A0A2R9AJU8_PANPA	UniProtKB/TrEMBL
	A0A2R9AJX1_PANPA	UniProtKB/TrEMBL
	A0A2R9AJX6_PANPA	UniProtKB/TrEMBL
	A0A2R9ANU9	ENTREZGENE, UniProtKB/TrEMBL
	A0A2R9AR17_PANPA	UniProtKB/TrEMBL
	A0A2R9AR22	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar