LMNA (lamin A/C) - Rat Genome Database

Name: LMNA
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: LMNA (lamin A/C) Pan paniscus

Analyze

Symbol:

LMNA

Name:

lamin A/C

RGD ID:

11845628

Description:

ENCODES a protein that exhibits identical protein binding (ortholog); protein phosphatase 1 binding (ortholog); INVOLVED IN cellular protein localization (ortholog); cellular response to hypoxia (ortholog); cellular senescence (ortholog); PARTICIPATES IN atherosclerosis pathway; ASSOCIATED WITH aortic valve disease 2 (ortholog); arrhythmogenic right ventricular cardiomyopathy (ortholog); arrhythmogenic right ventricular dysplasia 9 (ortholog); FOUND IN cytosol (ortholog); lamin filament (ortholog); nuclear body (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Also known as:

lamin; prelamin-A/C

RGD Orthologs

Human

Mouse

Rat

Chinchilla

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	LMNA (lamin A/C)	NCBI	Ortholog
Mus musculus (house mouse):	Lmna (lamin A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Lmna (lamin A/C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Lmna (lamin A/C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	LMNA (lamin A/C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Lmna (lamin A/C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	LMNA (lamin A/C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (African green monkey):	LMNA (lamin A/C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Lmna (lamin A/C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	1	135,253,700 - 135,311,542 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	135,253,700 - 135,311,539 (+)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	1	131,456,819 - 131,482,275 (+)	NCBI	Mhudiblu_PPA_v0		panPan3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

aortic valve disease 2 (ISO)

arrhythmogenic right ventricular cardiomyopathy (ISO)

arrhythmogenic right ventricular dysplasia 9 (ISO)

arteriosclerosis (ISO)

atrioventricular block (ISO)

autosomal dominant distal hereditary motor neuronopathy (ISO)

autosomal dominant Emery-Dreifuss muscular dystrophy 2 (ISO)

autosomal recessive Emery-Dreifuss muscular dystrophy 3 (ISO)

autosomal recessive limb-girdle muscular dystrophy (ISO)

autosomal recessive limb-girdle muscular dystrophy type 2B (ISO)

Cardiac Arrhythmias (ISO)

Cardiac Conduction Disease with or without Dilated Cardiomyopathy (ISO)

cardiomyopathy (ISO)

catecholaminergic polymorphic ventricular tachycardia 1 (ISO)

cerebrovascular disease (ISO)

Charcot-Marie-Tooth disease (ISO)

Charcot-Marie-Tooth disease type 2 (ISO)

Charcot-Marie-Tooth disease type 2B1 (ISO)

Congenital Foot Deformities (ISO)

Congenital Hand Deformities (ISO)

congenital muscular dystrophy (ISO)

congenital muscular dystrophy due to LMNA mutation (ISO)

Craniofacial Abnormalities (ISO)

diabetes mellitus (ISO)

Diabetic Nephropathies (ISO)

dilated cardiomyopathy (ISO)

dilated cardiomyopathy 1A (ISO)

dilated cardiomyopathy 1B (ISO)

dilated cardiomyopathy 1H (ISO)

dilated cardiomyopathy 1S (ISO)

dilated cardiomyopathy-hypergonadotropic hypogonadism syndrome (ISO)

disease of metabolism (ISO)

Emery-Dreifuss muscular dystrophy (ISO)

familial hypertrophic cardiomyopathy (ISO)

familial partial lipodystrophy (ISO)

familial partial lipodystrophy type 2 (ISO)

genetic disease (ISO)

Heart Block (ISO)

Heart-Hand Syndrome, Slovenian Type (ISO)

hereditary neuropathy with liability to pressure palsies (ISO)

HIV-Associated Lipodystrophy Syndrome (ISO)

hypertrophic cardiomyopathy (ISO)

hypertrophic cardiomyopathy 1 (ISO)

Insulin Resistance (ISO)

Laminopathies (ISO)

left ventricular noncompaction (ISO)

lethal restrictive dermopathy (ISO)

limb-girdle muscular dystrophy (ISO)

lipoatrophic diabetes mellitus (ISO)

lipodystrophy (ISO)

localized scleroderma (ISO)

long QT syndrome (ISO)

lung adenocarcinoma (ISO)

Mandibuloacral Dysplasia with Type A Lipodystrophy (ISO)

Metabolic Syndrome (ISO)

muscular dystrophy (ISO)

neuritis (ISO)

neuromuscular disease (ISO)

neuropathy (ISO)

Noonan syndrome 8 (ISO)

Paroxysmal Ventricular Fibrillation (ISO)

peripheral nervous system disease (ISO)

polycystic ovary syndrome (ISO)

polyneuropathy (ISO)

progeria (ISO)

Progeria Syndrome, Childhood-Onset (ISO)

Sinoatrial Block (ISO)

Sudden Cardiac Death (ISO)

Sudden Death (ISO)

transient cerebral ischemia (ISO)

type 2 diabetes mellitus (ISO)

Ventricular Tachycardia (ISO)

Werner syndrome (ISO)

Wolff-Parkinson-White syndrome (ISO)

X-linked Emery-Dreifuss muscular dystrophy 1 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cellular protein localization (ISO)

cellular response to hypoxia (ISO)

cellular senescence (ISO)

DNA double-strand break attachment to nuclear envelope (ISO)

establishment or maintenance of microtubule cytoskeleton polarity (ISO)

muscle organ development (ISO)

negative regulation of adipose tissue development (ISO)

negative regulation of cardiac muscle hypertrophy in response to stress (ISO)

negative regulation of cell population proliferation (ISO)

negative regulation of extrinsic apoptotic signaling pathway (ISO)

negative regulation of mesenchymal cell proliferation (ISO)

negative regulation of release of cytochrome c from mitochondria (ISO)

nuclear envelope organization (ISO)

nucleus organization (ISO)

positive regulation of cell aging (ISO)

positive regulation of gene expression (ISO)

positive regulation of histone H3-K9 trimethylation (ISO)

positive regulation of osteoblast differentiation (ISO)

protein import into nucleus (ISO)

protein localization to nucleus (ISO)

regulation of cell migration (ISO)

regulation of protein localization to nucleus (ISO)

regulation of protein stability (ISO)

regulation of telomere maintenance (ISO)

response to mechanical stimulus (ISO)

spermatogenesis (ISO)

ventricular cardiac muscle cell development (ISO)

Cellular Component

cytosol (ISO)

lamin filament (ISO)

nuclear body (ISO)

nuclear envelope (ISO)

nuclear matrix (ISO)

nuclear membrane (ISO)

nuclear speck (ISO)

nucleoplasm (ISO)

nucleus (ISO)

perinuclear region of cytoplasm (ISO)

site of double-strand break (ISO)

Molecular Function

identical protein binding (ISO)

protein binding (ISO)

protein phosphatase 1 binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

atherosclerosis pathway (ISO)

References

Genomics

Comparative Map Data

LMNA
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	1	135,253,700 - 135,311,542 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	135,253,700 - 135,311,539 (+)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	1	131,456,819 - 131,482,275 (+)	NCBI	Mhudiblu_PPA_v0		panPan3

LMNA
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	1	156,082,573 - 156,140,089 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh38.p13 Ensembl	1	156,082,573 - 156,140,081 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	1	156,082,573 - 156,140,081 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	1	156,052,364 - 156,109,872 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	154,351,085 - 154,376,502 (+)	NCBI	NCBI36		hg18	NCBI36
Build 34	1	152,897,570 - 152,922,944	NCBI
Celera	1	129,157,453 - 129,182,870 (+)	NCBI
Cytogenetic Map	1	q22	NCBI
HuRef	1	127,414,589 - 127,472,062 (+)	NCBI		HuRef
CHM1_1	1	157,448,449 - 157,505,990 (+)	NCBI		CHM1_1

Lmna
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	3	88,388,455 - 88,413,842 (-)	NCBI	GRCm39		mm39
GRCm39 Ensembl	3	88,387,454 - 88,417,263 (-)	Ensembl
GRCm38	3	88,481,148 - 88,509,932 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	3	88,480,147 - 88,509,956 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	3	88,285,071 - 88,307,254 (-)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	3	88,567,076 - 88,589,234 (-)	NCBI			mm8
Celera	3	88,521,102 - 88,543,289 (-)	NCBI		Celera
Cytogenetic Map	3	F1	NCBI
cM Map	3	38.84	NCBI

Lmna
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	2	173,939,751 - 173,960,423 (-)	NCBI
Rnor_6.0 Ensembl	2	187,842,885 - 187,863,516 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	2	187,842,884 - 187,863,552 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	2	207,245,237 - 207,265,928 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	180,595,724 - 180,616,354 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	2	180,545,829 - 180,566,460 (-)	NCBI
Celera	2	167,884,341 - 167,905,010 (-)	NCBI		Celera
Cytogenetic Map	2	q34	NCBI

Lmna
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955545	2,290,037 - 2,313,033 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955545	2,290,076 - 2,310,982 (+)	NCBI	ChiLan1.0	ChiLan1.0

LMNA
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1 Ensembl	7	41,508,450 - 41,746,931 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
CanFam3.1	7	41,702,491 - 41,719,870 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1

Lmna
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004936580	5,374,208 - 5,395,442 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

LMNA
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	93,899,026 - 93,949,398 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	4	93,899,019 - 93,927,255 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	102,641,459 - 102,668,722 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3
Pig Cytomap	4	q	NCBI

LMNA
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	7,723,059 - 7,748,799 (-)	NCBI
ChlSab1.1 Ensembl	20	7,723,477 - 7,748,780 (-)	Ensembl

Lmna
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624885	1,423,563 - 1,466,657 (+)	NCBI

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_034937332	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	SSBP01000260	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSPPAT00000052850 ⟹ ENSPPAP00000029995

RefSeq Status:

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	1	135,253,700 - 135,311,539 (+)	Ensembl

RefSeq Acc Id:

ENSPPAT00000052872 ⟹ ENSPPAP00000030016

RefSeq Status:

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	1	135,285,593 - 135,310,562 (+)	Ensembl

RefSeq Acc Id:

ENSPPAT00000052883 ⟹ ENSPPAP00000030027

RefSeq Status:

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	1	135,285,593 - 135,309,213 (+)	Ensembl

RefSeq Acc Id:

ENSPPAT00000052910 ⟹ ENSPPAP00000030053

RefSeq Status:

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	1	135,285,593 - 135,309,213 (+)	Ensembl

RefSeq Acc Id:

ENSPPAT00000052922 ⟹ ENSPPAP00000030065

RefSeq Status:

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	1	135,297,162 - 135,311,297 (+)	Ensembl

RefSeq Acc Id:

ENSPPAT00000052927 ⟹ ENSPPAP00000030070

RefSeq Status:

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	1	135,297,761 - 135,309,213 (+)	Ensembl

RefSeq Acc Id:

ENSPPAT00000052934 ⟹ ENSPPAP00000030077

RefSeq Status:

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	1	135,300,768 - 135,310,562 (+)	Ensembl

RefSeq Acc Id:

XM_034937332 ⟹ XP_034793223

RefSeq Status:

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
Mhudiblu_PPA_v0	1	131,456,819 - 131,482,275 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_034793223	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

XP_034793223 ⟸ XM_034937332

RefSeq Acc Id:

ENSPPAP00000029995 ⟸ ENSPPAT00000052850

RefSeq Acc Id:

ENSPPAP00000030016 ⟸ ENSPPAT00000052872

RefSeq Acc Id:

ENSPPAP00000030027 ⟸ ENSPPAT00000052883

RefSeq Acc Id:

ENSPPAP00000030077 ⟸ ENSPPAT00000052934

RefSeq Acc Id:

ENSPPAP00000030053 ⟸ ENSPPAT00000052910

RefSeq Acc Id:

ENSPPAP00000030065 ⟸ ENSPPAT00000052922

RefSeq Acc Id:

ENSPPAP00000030070 ⟸ ENSPPAT00000052927

Protein Domains

IF rod LTD

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSPPAG00000037857	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSPPAP00000029995	UniProtKB/TrEMBL
	ENSPPAP00000030016	UniProtKB/TrEMBL
	ENSPPAP00000030027	UniProtKB/TrEMBL
	ENSPPAP00000030053	UniProtKB/TrEMBL
	ENSPPAP00000030065	UniProtKB/TrEMBL
	ENSPPAP00000030070	UniProtKB/TrEMBL
	ENSPPAP00000030077	UniProtKB/TrEMBL
Ensembl Transcript	ENSPPAT00000052850	UniProtKB/TrEMBL
	ENSPPAT00000052872	UniProtKB/TrEMBL
	ENSPPAT00000052883	UniProtKB/TrEMBL
	ENSPPAT00000052910	UniProtKB/TrEMBL
	ENSPPAT00000052922	UniProtKB/TrEMBL
	ENSPPAT00000052927	UniProtKB/TrEMBL
	ENSPPAT00000052934	UniProtKB/TrEMBL
Gene3D-CATH	1.20.5.1160	UniProtKB/TrEMBL
	2.60.40.1260	UniProtKB/TrEMBL
InterPro	IF_conserved	UniProtKB/TrEMBL
	IF_rod_dom	UniProtKB/TrEMBL
	IF_rod_dom_coil1B	UniProtKB/TrEMBL
	Lamin_tail_dom	UniProtKB/TrEMBL
	Lamin_tail_dom_sf	UniProtKB/TrEMBL
NCBI Gene	LMNA	ENTREZGENE
Pfam	Filament	UniProtKB/TrEMBL
	LTD	UniProtKB/TrEMBL
PROSITE	IF_ROD_1	UniProtKB/TrEMBL
	IF_ROD_2	UniProtKB/TrEMBL
	LTD	UniProtKB/TrEMBL
SMART	Filament	UniProtKB/TrEMBL
Superfamily-SCOP	SSF74853	UniProtKB/TrEMBL
UniProt	A0A2R9BK07_PANPA	UniProtKB/TrEMBL
	A0A2R9BK76_PANPA	UniProtKB/TrEMBL
	A0A2R9BK80_PANPA	UniProtKB/TrEMBL
	A0A2R9BKX5_PANPA	UniProtKB/TrEMBL
	A0A2R9BNK9_PANPA	UniProtKB/TrEMBL
	A0A2R9BNQ7_PANPA	UniProtKB/TrEMBL
	A0A2R9BTW3_PANPA	UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

RGD Manual Annotations