TMEM79 (transmembrane protein 79) - Rat Genome Database

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Gene: TMEM79 (transmembrane protein 79) Pan paniscus
Analyze
Symbol: TMEM79
Name: transmembrane protein 79
RGD ID: 11845604
Description: ENCODES a protein that exhibits identical protein binding (inferred); INVOLVED IN cornification (ortholog); cuticle development (ortholog); establishment of skin barrier (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease type 2 (ortholog); dyschromatosis symmetrica hereditaria (ortholog); gastrointestinal stromal tumor (ortholog); FOUND IN cytoplasm (inferred); integral component of membrane (inferred); lysosomal membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11135,455,766 - 135,465,725 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1135,455,766 - 135,465,426 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01131,625,864 - 131,635,370 (+)NCBIMhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
TMEM79
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11135,455,766 - 135,465,725 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1135,455,766 - 135,465,426 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01131,625,864 - 131,635,370 (+)NCBIMhudiblu_PPA_v0panPan3
TMEM79
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381156,282,932 - 156,292,443 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1156,282,935 - 156,293,185 (+)EnsemblGRCh38hg38GRCh38
GRCh371156,252,723 - 156,262,234 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361154,519,363 - 154,528,858 (+)NCBINCBI36hg18NCBI36
Celera1129,325,685 - 129,335,202 (+)NCBI
Cytogenetic Map1q22NCBI
HuRef1127,613,374 - 127,622,893 (+)NCBIHuRef
CHM1_11157,648,681 - 157,658,193 (+)NCBICHM1_1
T2T-CHM13v2.01155,421,394 - 155,430,906 (+)NCBI
Tmem79
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39388,235,960 - 88,241,740 (-)NCBIGRCm39mm39
GRCm39 Ensembl388,235,962 - 88,243,455 (-)Ensembl
GRCm38388,328,653 - 88,334,433 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl388,328,655 - 88,336,148 (-)EnsemblGRCm38mm10GRCm38
MGSCv37388,132,575 - 88,138,355 (-)NCBIGRCm37mm9NCBIm37
MGSCv36388,414,580 - 88,420,360 (-)NCBImm8
Celera388,368,227 - 88,374,066 (-)NCBICelera
Cytogenetic Map3F1NCBI
Tmem79
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22173,798,267 - 173,803,151 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl2173,798,267 - 173,803,046 (-)Ensembl
Rnor_6.02187,701,522 - 187,706,452 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2187,697,509 - 187,706,321 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02207,104,465 - 207,109,423 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42180,442,064 - 180,446,842 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.12180,392,839 - 180,396,182 (-)NCBI
Celera2167,743,188 - 167,747,904 (-)NCBICelera
Cytogenetic Map2q34NCBI
Tmem79
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555452,420,592 - 2,436,485 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555452,420,594 - 2,436,485 (+)NCBIChiLan1.0ChiLan1.0
TMEM79
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1741,591,332 - 41,597,993 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl741,591,848 - 41,595,816 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha741,079,282 - 41,085,961 (-)NCBI
ROS_Cfam_1.0741,455,860 - 41,462,538 (-)NCBI
ROS_Cfam_1.0 Ensembl741,456,376 - 41,460,343 (-)Ensembl
UMICH_Zoey_3.1741,237,244 - 41,243,922 (-)NCBI
UNSW_CanFamBas_1.0741,290,458 - 41,297,136 (-)NCBI
UU_Cfam_GSD_1.0741,574,521 - 41,581,199 (-)NCBI
Tmem79
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505826,488,954 - 26,495,618 (+)NCBI
SpeTri2.0NW_0049365805,519,577 - 5,525,608 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TMEM79
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl493,762,177 - 93,768,633 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1493,762,176 - 93,768,840 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24102,461,788 - 102,468,826 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TMEM79
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1207,569,757 - 7,579,615 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl207,566,538 - 7,579,605 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660386,865,482 - 6,875,307 (-)NCBIVero_WHO_p1.0
Tmem79
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248851,562,092 - 1,567,303 (+)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_0046248851,562,031 - 1,567,882 (+)NCBIHetGla_female_1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000061552   ⟹   ENSPPAP00000038648
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1135,455,766 - 135,465,426 (+)Ensembl
RefSeq Acc Id: XM_003821069   ⟹   XP_003821117
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.11135,455,766 - 135,465,725 (+)NCBI
Mhudiblu_PPA_v01131,625,864 - 131,635,370 (+)NCBI
Sequence:
RefSeq Acc Id: XM_024926474   ⟹   XP_024782242
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.11135,457,123 - 135,465,725 (+)NCBI
Mhudiblu_PPA_v01131,626,069 - 131,635,370 (+)NCBI
Sequence:
RefSeq Acc Id: XM_034937535   ⟹   XP_034793426
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v01131,625,871 - 131,635,156 (+)NCBI
Protein Sequences
Protein RefSeqs XP_003821117 (Get FASTA)   NCBI Sequence Viewer  
  XP_024782242 (Get FASTA)   NCBI Sequence Viewer  
  XP_034793426 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_003821117   ⟸   XM_003821069
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_024782242   ⟸   XM_024926474
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_034793426   ⟸   XM_034937535
- Peptide Label: isoform X2
RefSeq Acc Id: ENSPPAP00000038648   ⟸   ENSPPAT00000061552


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000042037 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSPPAP00000038648 UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000061552 UniProtKB/TrEMBL
KEGG Report pps:100979501 UniProtKB/TrEMBL
NCBI Gene TMEM79 ENTREZGENE
UniProt A0A2R9CCC5_PANPA UniProtKB/TrEMBL