TNFRSF14 (TNF receptor superfamily member 14) - Rat Genome Database

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Gene: TNFRSF14 (TNF receptor superfamily member 14) Pan paniscus
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Symbol: TNFRSF14
Name: TNF receptor superfamily member 14
RGD ID: 11844119
Description: ENCODES a protein that exhibits cytokine binding (inferred); ubiquitin protein ligase binding (inferred); INVOLVED IN CD4-positive, alpha-beta T cell proliferation (ortholog); defense response to Gram-negative bacterium (ortholog); defense response to Gram-positive bacterium (ortholog); ASSOCIATED WITH arteriosclerosis (ortholog); Brain Injuries (ortholog); celiac disease (ortholog); FOUND IN external side of plasma membrane (inferred); membrane (inferred); plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: tumor necrosis factor receptor superfamily member 14
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21225,684,004 - 225,692,010 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11224,344,543 - 224,352,496 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v011,288,493 - 1,296,532 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.112,427,421 - 2,435,615 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12,427,631 - 2,435,615 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
TNFRSF14
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21225,684,004 - 225,692,010 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11224,344,543 - 224,352,496 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v011,288,493 - 1,296,532 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.112,427,421 - 2,435,615 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12,427,631 - 2,435,615 (+)Ensemblpanpan1.1panPan2
TNFRSF14
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812,554,234 - 2,563,829 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12,555,639 - 2,565,382 (+)EnsemblGRCh38hg38GRCh38
GRCh3712,487,810 - 2,495,268 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3612,479,150 - 2,486,613 (-)NCBINCBI36Build 36hg18NCBI36
Build 3412,521,454 - 2,528,915NCBI
Celera190,732 - 98,195 (-)NCBICelera
Cytogenetic Map1p36.32NCBI
HuRef11,767,040 - 1,774,503 (+)NCBIHuRef
CHM1_112,474,873 - 2,482,336 (+)NCBICHM1_1
T2T-CHM13v2.011,997,007 - 2,005,473 (+)NCBIT2T-CHM13v2.0
Tnfrsf14
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394155,002,944 - 155,013,077 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4155,006,390 - 155,013,020 (-)EnsemblGRCm39 Ensembl
GRCm384154,918,487 - 154,928,620 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4154,921,933 - 154,928,563 (-)EnsemblGRCm38mm10GRCm38
MGSCv374154,296,319 - 154,302,186 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364153,766,010 - 153,771,877 (-)NCBIMGSCv36mm8
Celera4157,193,781 - 157,199,645 (-)NCBICelera
Cytogenetic Map4E2NCBI
cM Map485.81NCBI
Tnfrsf14
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85170,768,413 - 170,776,749 (-)NCBIGRCr8
mRatBN7.25165,486,069 - 165,494,421 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5165,484,262 - 165,493,703 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5168,191,197 - 168,198,892 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05170,012,607 - 170,020,302 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05169,975,147 - 169,982,843 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05172,328,259 - 172,337,221 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5172,328,262 - 172,335,892 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05175,784,222 - 175,792,597 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45171,727,707 - 171,735,340 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15171,738,202 - 171,745,835 (-)NCBI
Celera5163,692,588 - 163,700,221 (-)NCBICelera
Cytogenetic Map5q36NCBI
Tnfrsf14
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554868,670,182 - 8,684,677 (-)NCBIChiLan1.0ChiLan1.0
TNFRSF14
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1557,386,190 - 57,416,864 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl557,411,529 - 57,416,512 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha557,425,462 - 57,430,262 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0557,611,566 - 57,621,030 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl557,614,515 - 57,621,010 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1557,607,109 - 57,611,909 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0557,499,417 - 57,504,217 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0557,889,145 - 57,893,945 (+)NCBIUU_Cfam_GSD_1.0
Tnfrsf14
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505828,452,172 - 28,456,039 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049367371,008,228 - 1,013,575 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TNFRSF14
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120128,992,572 - 128,999,829 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl20128,992,489 - 129,000,338 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605433,335,588 - 33,343,167 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tnfrsf14
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248187,491,473 - 7,505,185 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Sequence


Ensembl Acc Id: ENSPPAT00000059982   ⟹   ENSPPAP00000037086
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl12,427,631 - 2,435,615 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000059987   ⟹   ENSPPAP00000037090
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl12,428,416 - 2,433,278 (+)Ensembl
RefSeq Acc Id: XM_008959415   ⟹   XP_008957663
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21225,684,004 - 225,691,951 (-)NCBI
NHGRI_mPanPan11224,344,543 - 224,352,192 (-)NCBI
Mhudiblu_PPA_v011,288,798 - 1,296,532 (+)NCBI
PanPan1.112,427,866 - 2,435,615 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008959416   ⟹   XP_008957664
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21225,684,004 - 225,691,585 (-)NCBI
NHGRI_mPanPan11224,344,543 - 224,352,083 (-)NCBI
Mhudiblu_PPA_v011,288,903 - 1,296,532 (+)NCBI
PanPan1.112,427,631 - 2,435,615 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008959417   ⟹   XP_008957665
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21225,684,004 - 225,692,010 (-)NCBI
NHGRI_mPanPan11224,344,543 - 224,352,496 (-)NCBI
Mhudiblu_PPA_v011,288,493 - 1,296,532 (+)NCBI
PanPan1.112,427,421 - 2,435,615 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_008957663 (Get FASTA)   NCBI Sequence Viewer  
  XP_008957664 (Get FASTA)   NCBI Sequence Viewer  
  XP_008957665 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000037086
  ENSPPAP00000037086.1
  ENSPPAP00000037090.1
RefSeq Acc Id: XP_008957665   ⟸   XM_008959417
- UniProtKB: A0A2R9C593 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008957664   ⟸   XM_008959416
- UniProtKB: A0A2R9C593 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008957663   ⟸   XM_008959415
- UniProtKB: A0A2R9C593 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSPPAP00000037086   ⟸   ENSPPAT00000059982
Ensembl Acc Id: ENSPPAP00000037090   ⟸   ENSPPAT00000059987
Protein Domains
TNFR-Cys


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000041295 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000059982.1 UniProtKB/TrEMBL
  ENSPPAT00000059987.1 UniProtKB/TrEMBL
Gene3D-CATH Tumor Necrosis Factor Receptor, subunit A, domain 2 UniProtKB/TrEMBL
InterPro TNFR/NGFR_Cys_rich_reg UniProtKB/TrEMBL
  TNFR_14 UniProtKB/TrEMBL
  TNFRSF14/UL144_N UniProtKB/TrEMBL
KEGG Report pps:100984022 UniProtKB/TrEMBL
NCBI Gene TNFRSF14 ENTREZGENE
PANTHER TUMOR NECROSIS FACTOR RECEPTOR SUPERFAMILY MEMBER 14 UniProtKB/TrEMBL
  TUMOR NECROSIS FACTOR RECEPTOR SUPERFAMILY MEMBER 14 UniProtKB/TrEMBL
Pfam TNFR_c6 UniProtKB/TrEMBL
PRINTS TNFACTORR14 UniProtKB/TrEMBL
PROSITE TNFR_NGFR_1 UniProtKB/TrEMBL
  TNFR_NGFR_2 UniProtKB/TrEMBL
SMART TNFR UniProtKB/TrEMBL
Superfamily-SCOP TNF receptor-like UniProtKB/TrEMBL
UniProt A0A2R9C591_PANPA UniProtKB/TrEMBL
  A0A2R9C593 ENTREZGENE, UniProtKB/TrEMBL