ZSCAN9 (zinc finger and SCAN domain containing 9)

Gene: ZSCAN9 (zinc finger and SCAN domain containing 9) Pan paniscus

Analyze

Symbol:

ZSCAN9

Name:

zinc finger and SCAN domain containing 9

RGD ID:

11844106

Description:

ENCODES a protein that exhibits sequence-specific double-stranded DNA binding (inferred); ASSOCIATED WITH genetic disease (ortholog); megacolon (ortholog); FOUND IN nucleus (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

zinc finger and SCAN domain-containing protein 9; zinc finger protein 193; ZNF193

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	5	42,838,363 - 42,849,121 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	6	38,839,346 - 38,850,106 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	6	28,026,888 - 28,035,841 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	6	28,700,078 - 28,708,390 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	6	28,700,203 - 28,709,034 (+)	Ensembl	panpan1.1		panPan2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

megacolon (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

nucleus (IEA)

Molecular Function

protein binding (ISO)

sequence-specific double-stranded DNA binding (IEA)

References

Genomics

Comparative Map Data

ZSCAN9
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	5	42,838,363 - 42,849,121 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	6	38,839,346 - 38,850,106 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	6	28,026,888 - 28,035,841 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	6	28,700,078 - 28,708,390 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	6	28,700,203 - 28,709,034 (+)	Ensembl	panpan1.1		panPan2

ZSCAN9
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	6	28,225,240 - 28,233,487 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	6	28,224,886 - 28,233,487 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	6	28,193,053 - 28,201,265 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	6	28,301,049 - 28,309,239 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	6	28,301,051 - 28,309,239	NCBI
Celera	6	29,799,524 - 29,807,714 (+)	NCBI		Celera
Cytogenetic Map	6	p22.1	NCBI
HuRef	6	28,000,685 - 28,008,921 (+)	NCBI		HuRef
CHM1_1	6	28,195,396 - 28,203,632 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	6	28,096,976 - 28,105,223 (+)	NCBI		T2T-CHM13v2.0

Zscan9
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955465	13,597,629 - 13,604,331 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955465	13,597,548 - 13,604,550 (+)	NCBI	ChiLan1.0	ChiLan1.0

ZSCAN9
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	22,082,171 - 22,089,673 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	7	22,082,075 - 22,089,724 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	24,025,982 - 24,032,653 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ZSCAN9
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	17	44,349,537 - 44,358,697 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666044	27,886,985 - 27,895,566 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Zscan9
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624756	24,659,418 - 24,663,078 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003829676	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034961636	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034961637	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034961638	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_055113276	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_055113277	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_055113278	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JARIFH020000005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSPPAT00000026704 ⟹ ENSPPAP00000006051

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	6	28,700,203 - 28,708,390 (+)	Ensembl

RefSeq Acc Id:

ENSPPAT00000026707 ⟹ ENSPPAP00000006053

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	6	28,701,931 - 28,709,034 (+)	Ensembl

RefSeq Acc Id:

ENSPPAT00000026708 ⟹ ENSPPAP00000006054

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	6	28,701,931 - 28,709,034 (+)	Ensembl

RefSeq Acc Id:

XM_003829676 ⟹ XP_003829724

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	5	42,838,375 - 42,849,121 (+)	NCBI
NHGRI_mPanPan1	6	38,839,354 - 38,850,106 (+)	NCBI
Mhudiblu_PPA_v0	6	28,027,571 - 28,035,841 (+)	NCBI
PanPan1.1	6	28,700,079 - 28,708,390 (+)	NCBI

Sequence:

show sequence

GGACGCCAGGAAATTGGGGGTTGAGTCCGAAGCAAGGTGAACGCCGGACATCGAGACATGGAAT
CCTAGACCGGCCCGGAAGTGCCTCTGCTCCGTCCGCCTTCGAGGAGAGGTCGGCATCTTTCTTC
CCTGCCCGGCCATTGTTCGTGCCGCGCTTCTAGCAACGCCGGGCCGGCAAGCGCCTCCAAGGTT
TGTCTTGAAGCATAGCTCCAGCTGGAGGGTACCTTTTAAGCTGTTCAAGGTCAAGATGAATACA
AACTCAAAGGAGGTTTTATCCCTGGGTGTTCAAGTTCCCGAGGCATGGGAAGAACTTCTGACAA
TGAAAGTGGAAGCAAAAAGTCACCTTCAATGGCAGGAATCCAGACTGAAACGCAGTAATCCACT
GGCAAGGGAAATCTTCCGAAGGCACTTTCGACAGCTGTGCTACCAAGAGACCCCTGGACCAAGG
GAGGCTCTTACTCGACTCCAGGAACTTTGTTACCAGTGGTTGAGGCCACATGTGAGCACAAAGG
AGCAGATTTTGGATCTGCTGGTGCTGGAGCAGTTTCTATCCATTCTGCCCAAGGAGCTCCAGGG
CTGGGTGAGGGAACACTGTCCAGAGAGTGGAGAAGAGGCTGTGATTTTGCTGGAGGATCTGGAG
AGAGAGCTCGATGAACCACAACATGAGATGGTGGCCCACAGACACAGACAAGAAGTCCTCTGTA
AAGAGATGGTGCCTCTAGCAGAGCAGACACCACTGAGCCTTCAGTCCCAGCCTAAGGAGCCACA
GCTCACATGTGACTCTGCTCAGAAGTGCCATTCTATTGGAGAGGCAGATGAAGTAATCAAGACT
GAGGACAGAGAGTTGGTGCTAAGGAAAGACTGTCCTAAGATAGTGGAACCACATGGGAAAATGT
TTAATGAGCAGACCTGGGAGGTATCACAGCAGGATCCCTCACATGGAGAAGTTGGTGAACATAA
GGATAGGATAGAGAGGCAGTGGGGAAACCTCTTAGGAGAGGGGCAACACAAATGTGAAGAATGT
GGGAAGAGCTTTACTCAGAGCTCAGGTCTCATTCGACATCAAAGAATTCATACTGGAGAAAGAC
CTTATGAATGTAATGAATGTGGGAAAGCCTTCAGTCGAAGTTCTGGTCTTTTTAATCACCGAGG
AATCCACAATATACAGAAACGGTACCACTGCAAGGAGTGTGGGAAGGCCTTCAGTCAGAGTGCG
GGTCTTATCCAGCATCAGAGAATCCACAAAGGAGAAAAGCCGTATCAGTGCAGCCAGTGCAGTA
AGAGCTACAGTCGGCGTTCATTTCTCATTGAACATCAGAGAAGCCACACAGGGGAGCGACCTCA
CCAGTGCATTGAATGTGGGAAAAGCTTTAATCGACACTGCAACCTCATTCGCCATCAGAAGATC
CACACAGTGGCTGAGCTGGTCTAGGGCTTGGCTATGAGCAAGTTTTCCAGATCACCACCCAAGT
TGTGTGGGGCAGGTTGAGACTAGAAAATGCCTCTTTCTTCCTTTCTCCATGAAATGTGTTTGAA
ACAAATCCTGACTTAAGGCCCAGGGACTTCCTTAAAGGAAAGTTGGGTGTTTGAAGCTACTGTT
TTCTCTTTTGTTCGTTTTACCTCTTTCTTACTCTTACTAGCTGTGTCCCTCTTATTTATAATTT
ATTTATTTTTTTGAGATGGCTGCTAAACCCTTCTAATAATATAATAAATGGCACTGCCACAGCC
AACATGCCTGAAA

hide sequence

RefSeq Acc Id:

XM_034961636 ⟹ XP_034817527

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	5	42,838,363 - 42,849,121 (+)	NCBI
NHGRI_mPanPan1	6	38,842,011 - 38,850,106 (+)	NCBI
Mhudiblu_PPA_v0	6	28,026,888 - 28,035,841 (+)	NCBI

RefSeq Acc Id:

XM_055113276 ⟹ XP_054969251

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	5	42,838,364 - 42,849,121 (+)	NCBI
NHGRI_mPanPan1	6	38,839,346 - 38,850,106 (+)	NCBI

RefSeq Acc Id:

XM_055113277 ⟹ XP_054969252

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	5	42,838,376 - 42,849,121 (+)	NCBI
NHGRI_mPanPan1	6	38,839,355 - 38,850,106 (+)	NCBI

RefSeq Acc Id:

XM_055113278 ⟹ XP_054969253

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	5	42,838,374 - 42,849,121 (+)	NCBI
NHGRI_mPanPan1	6	38,839,354 - 38,850,106 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_003829724	(Get FASTA)	NCBI Sequence Viewer
	XP_034817527	(Get FASTA)	NCBI Sequence Viewer
	XP_054969251	(Get FASTA)	NCBI Sequence Viewer
	XP_054969252	(Get FASTA)	NCBI Sequence Viewer
	XP_054969253	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSPPAP00000006051.1
	ENSPPAP00000006053.1
	ENSPPAP00000006054
	ENSPPAP00000006054.1

RefSeq Acc Id:	XP_003829724 ⟸ XM_003829676
- Peptide Label:	isoform X3
- UniProtKB:	A0A2R8ZM80 (UniProtKB/TrEMBL)
- Sequence:	show sequence MNTNSKEVLSLGVQVPEAWEELLTMKVEAKSHLQWQESRLKRSNPLAREIFRRHFRQLCYQETP GPREALTRLQELCYQWLRPHVSTKEQILDLLVLEQFLSILPKELQGWVREHCPESGEEAVILLE DLERELDEPQHEMVAHRHRQEVLCKEMVPLAEQTPLSLQSQPKEPQLTCDSAQKCHSIGEADEV IKTEDRELVLRKDCPKIVEPHGKMFNEQTWEVSQQDPSHGEVGEHKDRIERQWGNLLGEGQHKC EECGKSFTQSSGLIRHQRIHTGERPYECNECGKAFSRSSGLFNHRGIHNIQKRYHCKECGKAFS QSAGLIQHQRIHKGEKPYQCSQCSKSYSRRSFLIEHQRSHTGERPHQCIECGKSFNRHCNLIRH QKIHTVAELV hide sequence

RefSeq Acc Id:	XP_034817527 ⟸ XM_034961636
- Peptide Label:	isoform X2

RefSeq Acc Id:

ENSPPAP00000006054 ⟸ ENSPPAT00000026708

RefSeq Acc Id:

ENSPPAP00000006053 ⟸ ENSPPAT00000026707

RefSeq Acc Id:

ENSPPAP00000006051 ⟸ ENSPPAT00000026704

RefSeq Acc Id:	XP_054969251 ⟸ XM_055113276
- Peptide Label:	isoform X1
- UniProtKB:	A0A2R8ZM74 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_054969253 ⟸ XM_055113278
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_054969252 ⟸ XM_055113277
- Peptide Label:	isoform X3
- UniProtKB:	A0A2R8ZM80 (UniProtKB/TrEMBL)

Protein Domains

C2H2-type SCAN box

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSPPAG00000024230	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSPPAT00000026704.1	UniProtKB/TrEMBL
	ENSPPAT00000026707.1	UniProtKB/TrEMBL
	ENSPPAT00000026708.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.4020.10	UniProtKB/TrEMBL
	Classic Zinc Finger	UniProtKB/TrEMBL
InterPro	SCAN_dom	UniProtKB/TrEMBL
	SCAN_sf	UniProtKB/TrEMBL
	Znf_C2H2_sf	UniProtKB/TrEMBL
	Znf_C2H2_type	UniProtKB/TrEMBL
KEGG Report	pps:100983173	UniProtKB/TrEMBL
NCBI Gene	ZSCAN9	ENTREZGENE
PANTHER	PROTEIN ZBED8-RELATED	UniProtKB/TrEMBL
	SCAN DOMAIN-CONTAINING PROTEIN 3	UniProtKB/TrEMBL
Pfam	SCAN	UniProtKB/TrEMBL
	zf-C2H2	UniProtKB/TrEMBL
PROSITE	SCAN_BOX	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_1	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_2	UniProtKB/TrEMBL
SMART	SCAN	UniProtKB/TrEMBL
	ZnF_C2H2	UniProtKB/TrEMBL
Superfamily-SCOP	Retrovirus capsid dimerization domain-like	UniProtKB/TrEMBL
	SSF57667	UniProtKB/TrEMBL
UniProt	A0A2R8ZM74	ENTREZGENE, UniProtKB/TrEMBL
	A0A2R8ZM80	ENTREZGENE, UniProtKB/TrEMBL
	A0A2R8ZPX2_PANPA	UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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