LY6D (lymphocyte antigen 6 family member D) - Rat Genome Database

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Gene: LY6D (lymphocyte antigen 6 family member D) Pan paniscus
Analyze
Symbol: LY6D
Name: lymphocyte antigen 6 family member D
RGD ID: 11843181
Description: INVOLVED IN lymphocyte differentiation (inferred); response to stilbenoid (inferred); ASSOCIATED WITH epidermolysis bullosa simplex with muscular dystrophy (ortholog); genetic disease (ortholog); holoprosencephaly (ortholog); FOUND IN cell surface (inferred); membrane (inferred); plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC103786230; lymphocyte antigen 6 complex, locus D; lymphocyte antigen 6D; uncharacterized LOC103786230; uncharacterized protein LOC103786230
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v27160,221,733 - 160,223,486 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan18135,747,751 - 135,749,521 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v08139,497,413 - 139,499,182 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.18142,534,009 - 142,542,207 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl8142,540,251 - 142,542,207 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
LY6D
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v27160,221,733 - 160,223,486 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan18135,747,751 - 135,749,521 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v08139,497,413 - 139,499,182 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.18142,534,009 - 142,542,207 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl8142,540,251 - 142,542,207 (-)Ensemblpanpan1.1panPan2
LY6D
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh388142,784,882 - 142,786,539 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl8142,784,882 - 142,786,539 (-)EnsemblGRCh38hg38GRCh38
GRCh378143,866,298 - 143,867,955 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 368143,863,300 - 143,865,010 (-)NCBINCBI36Build 36hg18NCBI36
Build 348143,863,299 - 143,865,010NCBI
Celera8140,176,029 - 140,177,739 (-)NCBICelera
Cytogenetic Map8q24.3NCBI
HuRef8139,118,457 - 139,120,167 (-)NCBIHuRef
CHM1_18143,906,449 - 143,908,159 (-)NCBICHM1_1
T2T-CHM13v2.08143,928,320 - 143,929,977 (-)NCBIT2T-CHM13v2.0
Ly6d
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391574,633,905 - 74,635,416 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1574,633,905 - 74,635,469 (-)EnsemblGRCm39 Ensembl
GRCm381574,762,056 - 74,763,567 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1574,762,056 - 74,763,620 (-)EnsemblGRCm38mm10GRCm38
MGSCv371574,592,486 - 74,593,997 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361574,589,311 - 74,590,822 (-)NCBIMGSCv36mm8
Celera1576,267,012 - 76,268,523 (-)NCBICelera
Cytogenetic Map15D3NCBI
cM Map1534.27NCBI
Ly6d
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87108,532,207 - 108,533,943 (-)NCBIGRCr8
mRatBN7.27106,643,225 - 106,644,733 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7106,643,232 - 106,644,733 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7108,401,328 - 108,402,836 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07110,625,003 - 110,626,511 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07110,570,937 - 110,572,445 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07115,993,304 - 115,994,812 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7115,993,301 - 115,994,783 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07115,898,693 - 115,900,201 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47112,872,991 - 112,874,499 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17112,907,219 - 112,908,700 (-)NCBI
Celera7103,044,373 - 103,045,881 (-)NCBICelera
Cytogenetic Map7q34NCBI
Ly6d
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554541,473,191 - 1,475,038 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554541,473,405 - 1,474,950 (-)NCBIChiLan1.0ChiLan1.0
LY6D
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha1336,697,717 - 36,705,631 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01337,225,183 - 37,233,099 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1337,225,167 - 37,233,567 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11336,943,849 - 36,951,762 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01337,033,467 - 37,041,380 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01337,455,627 - 37,463,542 (-)NCBIUU_Cfam_GSD_1.0
LOC101968671
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244053031,673,330 - 1,675,006 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364709,099,477 - 9,101,112 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364709,099,502 - 9,101,105 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LY6D
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl41,444,114 - 1,445,712 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.141,444,029 - 1,445,714 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
LY6D
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.18137,033,609 - 137,038,589 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660392,914,198 - 2,915,933 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ly6d
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473513,871,505 - 13,873,045 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000058215   ⟹   ENSPPAP00000035327
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl8142,540,251 - 142,542,207 (-)Ensembl
RefSeq Acc Id: XM_003819477   ⟹   XP_003819525
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v27160,221,733 - 160,223,486 (-)NCBI
NHGRI_mPanPan18135,747,751 - 135,749,521 (-)NCBI
Mhudiblu_PPA_v08139,497,413 - 139,499,182 (-)NCBI
PanPan1.18142,540,503 - 142,542,207 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004673124
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v27160,221,733 - 160,223,138 (-)NCBI
NHGRI_mPanPan18135,747,751 - 135,749,156 (-)NCBI
Mhudiblu_PPA_v08139,497,413 - 139,498,818 (-)NCBI
Protein Sequences
Protein RefSeqs XP_003819525 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000035327.1
Reference Protein Sequences
RefSeq Acc Id: XP_003819525   ⟸   XM_003819477
- Sequence:
RefSeq Acc Id: ENSPPAP00000035327   ⟸   ENSPPAT00000058215
Protein Domains
UPAR/Ly6


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000040489 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000058215.1 UniProtKB/TrEMBL
Gene3D-CATH 2.10.60.10 UniProtKB/TrEMBL
InterPro CD59_antigen_CS UniProtKB/TrEMBL
  LY6_UPA_recep-like UniProtKB/TrEMBL
  Ly6D UniProtKB/TrEMBL
  Snake_toxin-like_sf UniProtKB/TrEMBL
KEGG Report pps:100982545 UniProtKB/TrEMBL
NCBI Gene LY6D ENTREZGENE
PANTHER LYMPHOCYTE ANTIGEN 6D UniProtKB/TrEMBL
  PTHR16982 UniProtKB/TrEMBL
Pfam UPAR_LY6 UniProtKB/TrEMBL
PROSITE LY6_UPAR UniProtKB/TrEMBL
SMART SM00134 UniProtKB/TrEMBL
Superfamily-SCOP SSF57302 UniProtKB/TrEMBL
UniProt A0A2R9C091_PANPA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-05-08 LY6D  lymphocyte antigen 6 family member D  LOC103786230  uncharacterized LOC103786230  Data merged from RGD:11750583 737654 PROVISIONAL
2017-02-01 LY6D  lymphocyte antigen 6 family member D    lymphocyte antigen 6 complex, locus D  Symbol and/or name change 5135510 APPROVED