C16H15orf39 (chromosome 16 C15orf39 homolog) - Rat Genome Database

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Gene: C16H15orf39 (chromosome 16 C15orf39 homolog) Pan paniscus
Analyze
Symbol: C16H15orf39 (Ensembl: C15orf39)
Name: chromosome 16 C15orf39 homolog (Ensembl:chromosome 15 open reading frame 39)
RGD ID: 11841820
Description: ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); genetic disease (ortholog); FOUND IN cytosol (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: C15H15orf39; chromosome 15 C15orf39 homolog; chromosome 15 open reading frame, human C15orf39; uncharacterized protein C15orf39 homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21664,421,129 - 64,437,374 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11568,584,875 - 68,601,133 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01554,142,547 - 54,152,833 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11573,753,921 - 73,767,224 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1573,753,921 - 73,767,224 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytosol  (IEA)

References

Genomics

Comparative Map Data
C16H15orf39
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21664,421,129 - 64,437,374 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11568,584,875 - 68,601,133 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01554,142,547 - 54,152,833 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11573,753,921 - 73,767,224 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1573,753,921 - 73,767,224 (+)Ensemblpanpan1.1panPan2
C15orf39
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381575,198,889 - 75,212,169 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1575,195,643 - 75,212,169 (+)EnsemblGRCh38hg38GRCh38
GRCh371575,494,223 - 75,504,510 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361573,281,274 - 73,291,563 (+)NCBINCBI36Build 36hg18NCBI36
Celera1552,445,013 - 52,455,302 (+)NCBICelera
Cytogenetic Map15q24.2NCBI
HuRef1552,290,515 - 52,300,804 (+)NCBIHuRef
CHM1_11575,612,276 - 75,622,565 (+)NCBICHM1_1
T2T-CHM13v2.01573,068,928 - 73,082,210 (+)NCBIT2T-CHM13v2.0
1700017B05Rik
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39957,159,605 - 57,169,882 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl957,160,400 - 57,169,895 (-)EnsemblGRCm39 Ensembl
GRCm38957,252,322 - 57,262,599 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl957,253,117 - 57,262,612 (-)EnsemblGRCm38mm10GRCm38
MGSCv37957,100,129 - 57,110,406 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36957,780,149 - 57,791,618 (-)NCBIMGSCv36mm8
MGSCv36957,049,280 - 57,060,749 (-)NCBIMGSCv36mm8
Celera954,488,043 - 54,498,371 (-)NCBICelera
Cytogenetic Map9BNCBI
cM Map930.89NCBI
C8h15orf39
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8866,542,269 - 66,551,835 (-)NCBIGRCr8
mRatBN7.2857,646,324 - 57,655,896 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl857,645,756 - 57,655,941 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx863,169,172 - 63,178,701 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0861,447,917 - 61,457,446 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0859,312,462 - 59,321,992 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0861,913,588 - 61,923,149 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl861,913,589 - 61,919,874 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0860,482,444 - 60,492,005 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4860,995,695 - 61,006,387 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1861,015,617 - 61,051,527 (-)NCBI
Celera857,113,156 - 57,122,733 (-)NCBICelera
Cytogenetic Map8q24NCBI
CUNH15orf39
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554502,900,027 - 2,913,501 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554502,900,456 - 2,905,748 (-)NCBIChiLan1.0ChiLan1.0
C30H15orf39
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13038,164,958 - 38,178,986 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3038,173,103 - 38,177,905 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3038,095,781 - 38,109,763 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03038,368,802 - 38,382,755 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3038,373,834 - 38,381,674 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13038,322,096 - 38,336,054 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03038,372,801 - 38,381,573 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03038,603,898 - 38,617,884 (+)NCBIUU_Cfam_GSD_1.0
CUNH15orf39
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640116,263,480 - 116,272,304 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647134,114,278 - 34,120,369 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647134,114,325 - 34,120,376 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
C7H15orf39
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl758,381,034 - 58,386,366 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1758,380,602 - 58,390,117 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2763,069,381 - 63,078,871 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CUNH15orf39
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1268,249,619 - 8,259,065 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl268,246,524 - 8,261,900 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666048133,413,324 - 133,423,094 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CUNH15orf39
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624894262,746 - 271,649 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624894259,528 - 268,267 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000033759   ⟹   ENSPPAP00000011104
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1573,753,921 - 73,767,224 (+)Ensembl
RefSeq Acc Id: XM_014341549   ⟹   XP_014197035
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21664,427,733 - 64,437,374 (+)NCBI
NHGRI_mPanPan11568,591,492 - 68,601,133 (+)NCBI
Mhudiblu_PPA_v01554,142,547 - 54,152,833 (+)NCBI
PanPan1.11573,756,935 - 73,767,224 (+)NCBI
Sequence:
RefSeq Acc Id: XM_055098160   ⟹   XP_054954135
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21664,421,129 - 64,437,374 (+)NCBI
NHGRI_mPanPan11568,584,875 - 68,601,133 (+)NCBI
RefSeq Acc Id: XM_055098161   ⟹   XP_054954136
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21664,421,129 - 64,437,374 (+)NCBI
NHGRI_mPanPan11568,584,875 - 68,601,133 (+)NCBI
RefSeq Acc Id: XM_055098162   ⟹   XP_054954137
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21664,428,006 - 64,437,374 (+)NCBI
NHGRI_mPanPan11568,591,765 - 68,601,133 (+)NCBI
Protein Sequences
Protein RefSeqs XP_014197035 (Get FASTA)   NCBI Sequence Viewer  
  XP_054954135 (Get FASTA)   NCBI Sequence Viewer  
  XP_054954136 (Get FASTA)   NCBI Sequence Viewer  
  XP_054954137 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000011104.1
Reference Protein Sequences
RefSeq Acc Id: XP_014197035   ⟸   XM_014341549
- Sequence:
RefSeq Acc Id: ENSPPAP00000011104   ⟸   ENSPPAT00000033759
RefSeq Acc Id: XP_054954135   ⟸   XM_055098160
RefSeq Acc Id: XP_054954136   ⟸   XM_055098161
RefSeq Acc Id: XP_054954137   ⟸   XM_055098162


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000028760 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000033759.1 UniProtKB/TrEMBL
InterPro DUF5525 UniProtKB/TrEMBL
KEGG Report pps:100969117 UniProtKB/TrEMBL
NCBI Gene C15H15orf39 ENTREZGENE
PANTHER PTHR28422 UniProtKB/TrEMBL
  SIMILAR TO HUMAN CHROMOSOME 15 OPEN READING FRAME 39 UniProtKB/TrEMBL
Pfam DUF5525 UniProtKB/TrEMBL
UniProt A0A2R9A2M6_PANPA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2024-03-13 C16H15orf39  chromosome 16 C15orf39 homolog  C15H15orf39  chromosome 15 C15orf39 homolog  Symbol and/or name change 5135510 APPROVED
2018-05-08 C15H15orf39  chromosome 15 C15orf39 homolog    chromosome 15 open reading frame, human C15orf39  Symbol and/or name change 5135510 APPROVED