CDKN2AIP (CDKN2A interacting protein) - Rat Genome Database

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Gene: CDKN2AIP (CDKN2A interacting protein) Pan paniscus
Analyze
Symbol: CDKN2AIP
Name: CDKN2A interacting protein
RGD ID: 11840706
Description: ENCODES a protein that exhibits p53 binding (inferred); RNA binding (inferred); INVOLVED IN DNA damage response (inferred); negative regulation of cell growth (inferred); positive regulation of cell growth (inferred); ASSOCIATED WITH prostate cancer (ortholog); FOUND IN granular component (inferred); nucleolus (inferred); nucleoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v23181,174,659 - 181,182,619 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan14181,542,613 - 181,547,414 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v04175,621,561 - 175,626,138 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.14187,848,211 - 187,853,533 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4187,848,215 - 187,852,673 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
CDKN2AIP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v23181,174,659 - 181,182,619 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan14181,542,613 - 181,547,414 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v04175,621,561 - 175,626,138 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.14187,848,211 - 187,853,533 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4187,848,215 - 187,852,673 (+)Ensemblpanpan1.1panPan2
CDKN2AIP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384183,444,636 - 183,449,064 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4183,444,635 - 183,449,064 (+)EnsemblGRCh38hg38GRCh38
GRCh374184,365,789 - 184,370,217 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 364184,602,783 - 184,606,043 (+)NCBINCBI36Build 36hg18NCBI36
Celera4181,698,578 - 181,701,840 (+)NCBICelera
Cytogenetic Map4q35.1NCBI
HuRef4180,125,202 - 180,128,464 (+)NCBIHuRef
CHM1_14184,342,508 - 184,345,773 (+)NCBICHM1_1
T2T-CHM13v2.04186,787,446 - 186,791,876 (+)NCBIT2T-CHM13v2.0
Cdkn2aip
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39848,162,379 - 48,166,966 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl848,162,379 - 48,166,967 (-)EnsemblGRCm39 Ensembl
GRCm38847,709,344 - 47,713,931 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl847,709,344 - 47,713,932 (-)EnsemblGRCm38mm10GRCm38
MGSCv37848,794,698 - 48,799,285 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36849,208,265 - 49,212,716 (-)NCBIMGSCv36mm8
Celera850,386,813 - 50,391,398 (-)NCBICelera
Cytogenetic Map8B1.1NCBI
cM Map826.88NCBI
Cdkn2aip
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81651,266,613 - 51,274,051 (+)NCBIGRCr8
mRatBN7.21644,536,147 - 44,546,216 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1644,536,234 - 44,540,033 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1649,942,563 - 49,945,841 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01653,303,121 - 53,306,399 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01648,578,403 - 48,581,681 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01647,664,864 - 47,670,935 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1647,665,816 - 47,669,093 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01647,385,297 - 47,390,428 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41647,746,221 - 47,749,499 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11647,746,295 - 47,749,573 (+)NCBI
Celera1642,547,908 - 42,551,186 (+)NCBICelera
Cytogenetic Map16q11NCBI
Cdkn2aip
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540325,363,658 - 25,366,295 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540325,363,170 - 25,366,481 (-)NCBIChiLan1.0ChiLan1.0
CDKN2AIP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11646,899,146 - 46,903,523 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1646,900,521 - 46,903,339 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1647,332,264 - 47,336,599 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01649,122,256 - 49,126,587 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1649,123,024 - 49,126,616 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11647,084,374 - 47,088,704 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01647,699,883 - 47,704,220 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01647,834,077 - 47,838,409 (-)NCBIUU_Cfam_GSD_1.0
Cdkn2aip
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494332,467,590 - 32,471,315 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365545,639,448 - 5,642,092 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365545,638,671 - 5,642,276 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CDKN2AIP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1544,886,692 - 44,892,246 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11544,885,603 - 44,890,504 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21551,498,582 - 51,503,462 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CDKN2AIP
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.17129,429,535 - 129,433,687 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl7129,429,533 - 129,435,285 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037109,642,769 - 109,647,398 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cdkn2aip
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462476914,214,103 - 14,217,508 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSPPAT00000057441   ⟹   ENSPPAP00000034558
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl4187,848,215 - 187,852,673 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000057446   ⟹   ENSPPAP00000034563
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl4187,849,271 - 187,851,905 (+)Ensembl
RefSeq Acc Id: XM_003823451   ⟹   XP_003823499
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v23181,174,659 - 181,182,619 (+)NCBI
NHGRI_mPanPan14181,542,613 - 181,547,414 (+)NCBI
Mhudiblu_PPA_v04175,621,561 - 175,626,138 (+)NCBI
PanPan1.14187,848,216 - 187,853,533 (+)NCBI
Sequence:
RefSeq Acc Id: XM_034959464   ⟹   XP_034815355
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v23181,174,669 - 181,182,619 (+)NCBI
NHGRI_mPanPan14181,542,613 - 181,547,414 (+)NCBI
Mhudiblu_PPA_v04175,621,561 - 175,626,137 (+)NCBI
Protein Sequences
Protein RefSeqs XP_003823499 (Get FASTA)   NCBI Sequence Viewer  
  XP_034815355 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000034558.1
  ENSPPAP00000034563.1
RefSeq Acc Id: XP_003823499   ⟸   XM_003823451
- Peptide Label: isoform X1
- UniProtKB: A0A2R9BY03 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_034815355   ⟸   XM_034959464
- Peptide Label: isoform X2
Ensembl Acc Id: ENSPPAP00000034558   ⟸   ENSPPAT00000057441
Ensembl Acc Id: ENSPPAP00000034563   ⟸   ENSPPAT00000057446
Protein Domains
DRBM   XRN2-binding (XTBD)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000040121 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000057441.1 UniProtKB/TrEMBL
  ENSPPAT00000057446.1 UniProtKB/TrEMBL
InterPro dsRBD_dom UniProtKB/TrEMBL
  XTBD UniProtKB/TrEMBL
KEGG Report pps:100969799 UniProtKB/TrEMBL
NCBI Gene CDKN2AIP ENTREZGENE
PANTHER CDKN2A-INTERACTING PROTEIN UniProtKB/TrEMBL
  NF-KAPPA-B-REPRESSING FACTOR-RELATED UniProtKB/TrEMBL
Pfam XTBD UniProtKB/TrEMBL
PROSITE DS_RBD UniProtKB/TrEMBL
  XTBD UniProtKB/TrEMBL
UniProt A0A2R9BXZ8_PANPA UniProtKB/TrEMBL
  A0A2R9BY03 ENTREZGENE, UniProtKB/TrEMBL