ZNF653 (zinc finger protein 653) - Rat Genome Database

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Gene: ZNF653 (zinc finger protein 653) Pan paniscus
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Symbol: ZNF653
Name: zinc finger protein 653
RGD ID: 11839429
Description: ENCODES a protein that exhibits AF-2 domain binding (ortholog); transcription corepressor activity (ortholog); INVOLVED IN extracellular negative regulation of signal transduction (ortholog); negative regulation of nucleic acid-templated transcription (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11911,740,315 - 11,763,707 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1911,740,585 - 11,763,707 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01911,029,561 - 11,051,967 (-)NCBIMhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References

Genomics

Comparative Map Data
ZNF653
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11911,740,315 - 11,763,707 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1911,740,585 - 11,763,707 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01911,029,561 - 11,051,967 (-)NCBIMhudiblu_PPA_v0panPan3
ZNF653
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1911,483,427 - 11,505,839 (-)EnsemblGRCh38hg38GRCh38
GRCh381911,483,429 - 11,505,839 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371911,594,244 - 11,616,654 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361911,455,246 - 11,477,654 (-)NCBINCBI36hg18NCBI36
Build 341911,455,245 - 11,477,654NCBI
Celera1911,488,980 - 11,511,481 (-)NCBI
Cytogenetic Map19p13.2NCBI
HuRef1911,168,853 - 11,191,511 (-)NCBIHuRef
CHM1_11911,594,307 - 11,616,803 (-)NCBICHM1_1
Zfp653
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39921,966,707 - 21,982,692 (-)NCBIGRCm39mm39
GRCm39 Ensembl921,966,707 - 21,982,672 (-)Ensembl
GRCm38922,055,411 - 22,071,395 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl922,055,411 - 22,071,376 (-)EnsemblGRCm38mm10GRCm38
MGSCv37921,859,904 - 21,875,789 (-)NCBIGRCm37mm9NCBIm37
MGSCv36921,805,862 - 21,821,747 (-)NCBImm8
Celera919,324,393 - 19,340,278 (-)NCBICelera
Cytogenetic Map9A3NCBI
Zfp653
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2820,586,563 - 20,605,439 (-)NCBI
Rnor_6.0 Ensembl823,066,576 - 23,084,879 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0823,066,576 - 23,085,502 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0823,121,360 - 23,139,963 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4821,161,793 - 21,180,092 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1821,162,095 - 21,180,009 (-)NCBI
Celera821,977,392 - 21,995,212 (-)NCBICelera
Cytogenetic Map8q13NCBI
Znf653
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554952,363,334 - 2,375,654 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554952,363,123 - 2,375,895 (-)NCBIChiLan1.0ChiLan1.0
ZNF653
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12049,867,522 - 49,883,889 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2049,866,056 - 49,883,847 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2049,738,661 - 49,755,033 (+)NCBI
ROS_Cfam_1.02050,385,820 - 50,402,174 (+)NCBI
UMICH_Zoey_3.12049,596,144 - 49,612,496 (+)NCBI
UNSW_CanFamBas_1.02050,022,286 - 50,038,639 (+)NCBI
UU_Cfam_GSD_1.02050,265,471 - 50,281,817 (+)NCBI
Znf653
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118208,804,773 - 208,821,172 (+)NCBI
SpeTri2.0NW_0049366591,533,564 - 1,550,106 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZNF653
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl270,136,442 - 70,154,458 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1270,136,777 - 70,154,458 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2270,489,371 - 70,507,715 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ZNF653
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1610,407,624 - 10,430,246 (-)NCBI
ChlSab1.1 Ensembl610,406,808 - 10,430,029 (-)Ensembl
Vero_WHO_p1.0NW_0236660749,456,192 - 9,479,175 (+)NCBI
Znf653
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248283,250,683 - 3,263,915 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000044028   ⟹   ENSPPAP00000021228
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1911,740,585 - 11,763,707 (-)Ensembl
RefSeq Acc Id: XM_003830500   ⟹   XP_003830548
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.11911,740,585 - 11,763,707 (-)NCBI
Mhudiblu_PPA_v01911,029,563 - 11,051,967 (-)NCBI
Sequence:
RefSeq Acc Id: XM_034946861   ⟹   XP_034802752
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v01911,029,561 - 11,051,929 (-)NCBI
RefSeq Acc Id: XM_034946862   ⟹   XP_034802753
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v01911,029,561 - 11,051,929 (-)NCBI
RefSeq Acc Id: XM_034946863   ⟹   XP_034802754
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v01911,029,561 - 11,051,929 (-)NCBI
RefSeq Acc Id: XM_034946864   ⟹   XP_034802755
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v01911,029,674 - 11,051,929 (-)NCBI
RefSeq Acc Id: XM_034946865   ⟹   XP_034802756
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v01911,029,816 - 11,051,929 (-)NCBI
RefSeq Acc Id: XM_034946866   ⟹   XP_034802757
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v01911,029,561 - 11,051,754 (-)NCBI
RefSeq Acc Id: XM_034946867   ⟹   XP_034802758
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v01911,029,561 - 11,051,929 (-)NCBI
Reference Sequences
RefSeq Acc Id: XP_003830548   ⟸   XM_003830500
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_034802754   ⟸   XM_034946863
- Peptide Label: isoform X3
RefSeq Acc Id: XP_034802758   ⟸   XM_034946867
- Peptide Label: isoform X8
RefSeq Acc Id: XP_034802753   ⟸   XM_034946862
- Peptide Label: isoform X2
RefSeq Acc Id: XP_034802752   ⟸   XM_034946861
- Peptide Label: isoform X1
RefSeq Acc Id: XP_034802757   ⟸   XM_034946866
- Peptide Label: isoform X7
RefSeq Acc Id: XP_034802755   ⟸   XM_034946864
- Peptide Label: isoform X4
RefSeq Acc Id: XP_034802756   ⟸   XM_034946865
- Peptide Label: isoform X5
RefSeq Acc Id: ENSPPAP00000021228   ⟸   ENSPPAT00000044028


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000033830 Ensembl, ENTREZGENE
Ensembl Protein ENSPPAP00000021228 ENTREZGENE
NCBI Gene ZNF653 ENTREZGENE