RALBP1 (ralA binding protein 1) - Rat Genome Database

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Gene: RALBP1 (ralA binding protein 1) Pan paniscus
Analyze
Symbol: RALBP1
Name: ralA binding protein 1
RGD ID: 11838598
Description: ENCODES a protein that exhibits ATPase-coupled transmembrane transporter activity (inferred); GTPase activator activity (inferred); small GTPase binding (inferred); INVOLVED IN endocytosis (ortholog); negative regulation of smooth muscle cell proliferation (ortholog); positive regulation of oxidative stress-induced neuron intrinsic apoptotic signaling pathway (ortholog); PARTICIPATES IN doxorubicin pharmacokinetics pathway; vinblastine pharmacodynamics pathway; vincristine pharmacodynamics pathway; ASSOCIATED WITH chromosome 18p deletion syndrome (ortholog); dystonia (ortholog); genetic disease (ortholog); FOUND IN Schaffer collateral - CA1 synapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ralA-binding protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21728,912,572 - 28,978,250 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11814,604,717 - 14,670,844 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0184,747,555 - 4,810,710 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1187,028,188 - 7,091,369 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl187,028,188 - 7,090,934 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
RALBP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21728,912,572 - 28,978,250 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11814,604,717 - 14,670,844 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0184,747,555 - 4,810,710 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1187,028,188 - 7,091,369 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl187,028,188 - 7,090,934 (-)Ensemblpanpan1.1panPan2
RALBP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38189,475,009 - 9,538,114 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl189,475,009 - 9,538,114 (+)EnsemblGRCh38hg38GRCh38
GRCh37189,475,511 - 9,538,112 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36189,465,530 - 9,528,106 (+)NCBINCBI36Build 36hg18NCBI36
Build 34189,465,529 - 9,528,105NCBI
Celera189,359,767 - 9,422,335 (+)NCBICelera
Cytogenetic Map18p11.22NCBI
HuRef189,437,998 - 9,500,600 (+)NCBIHuRef
CHM1_1189,475,240 - 9,537,838 (+)NCBICHM1_1
T2T-CHM13v2.0189,636,797 - 9,701,515 (+)NCBIT2T-CHM13v2.0
Ralbp1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391766,155,410 - 66,192,750 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1766,155,413 - 66,192,793 (-)EnsemblGRCm39 Ensembl
GRCm381765,848,415 - 65,885,755 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1765,848,418 - 65,885,798 (-)EnsemblGRCm38mm10GRCm38
MGSCv371766,197,755 - 66,217,171 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361765,747,984 - 65,784,368 (-)NCBIMGSCv36mm8
Celera1770,152,450 - 70,171,874 (-)NCBICelera
Cytogenetic Map17E1.1NCBI
cM Map1735.26NCBI
Ralbp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr89112,903,289 - 112,940,093 (-)NCBIGRCr8
mRatBN7.29105,456,425 - 105,493,235 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl9105,456,425 - 105,492,707 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx9113,864,919 - 113,901,662 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.09118,974,826 - 119,011,623 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.09117,330,768 - 117,367,512 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.09113,579,107 - 113,598,477 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl9113,579,107 - 113,598,480 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.09113,111,327 - 113,130,697 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.49104,617,400 - 104,653,856 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.19104,826,889 - 104,863,322 (-)NCBI
Celera9102,832,909 - 102,869,009 (-)NCBICelera
Cytogenetic Map9q37NCBI
Ralbp1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554022,569,637 - 2,616,040 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554022,571,672 - 2,616,040 (-)NCBIChiLan1.0ChiLan1.0
RALBP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1775,461,220 - 75,511,860 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl775,461,222 - 75,510,229 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha774,854,142 - 74,908,610 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0775,516,008 - 75,571,183 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl775,516,476 - 75,571,183 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1775,213,986 - 75,269,336 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0775,231,509 - 75,286,643 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0775,541,877 - 75,596,810 (+)NCBIUU_Cfam_GSD_1.0
Ralbp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049442,604,387 - 2,623,145 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366261,832,584 - 1,851,467 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366261,832,703 - 1,851,486 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RALBP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl698,550,933 - 98,598,206 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1698,550,925 - 98,598,945 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2691,859,552 - 91,908,358 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RALBP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11868,353,823 - 68,415,221 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1868,391,245 - 68,413,555 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605043,305,367 - 43,366,990 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ralbp1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477018,127,025 - 18,147,465 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477018,117,106 - 18,147,472 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000034755   ⟹   ENSPPAP00000012093
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl187,028,188 - 7,090,934 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000034757   ⟹   ENSPPAP00000012095
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl187,030,358 - 7,048,943 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000034761   ⟹   ENSPPAP00000012099
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl187,045,476 - 7,053,105 (-)Ensembl
RefSeq Acc Id: XM_003809328   ⟹   XP_003809376
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21728,912,572 - 28,978,250 (-)NCBI
NHGRI_mPanPan11814,604,717 - 14,670,844 (-)NCBI
Mhudiblu_PPA_v0184,747,555 - 4,810,710 (-)NCBI
PanPan1.1187,028,188 - 7,091,369 (-)NCBI
Sequence:
RefSeq Acc Id: XM_014342280   ⟹   XP_014197766
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21728,912,572 - 28,974,759 (-)NCBI
NHGRI_mPanPan11814,604,717 - 14,667,328 (-)NCBI
Mhudiblu_PPA_v0184,747,555 - 4,810,206 (-)NCBI
PanPan1.1187,028,188 - 7,090,934 (-)NCBI
Sequence:
RefSeq Acc Id: XM_034943912   ⟹   XP_034799803
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21728,912,572 - 28,974,562 (-)NCBI
NHGRI_mPanPan11814,604,717 - 14,667,096 (-)NCBI
Mhudiblu_PPA_v0184,747,555 - 4,809,548 (-)NCBI
Protein Sequences
Protein RefSeqs XP_003809376 (Get FASTA)   NCBI Sequence Viewer  
  XP_014197766 (Get FASTA)   NCBI Sequence Viewer  
  XP_034799803 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000012093
  ENSPPAP00000012093.1
  ENSPPAP00000012095.1
  ENSPPAP00000012099.1
Reference Protein Sequences
RefSeq Acc Id: XP_003809376   ⟸   XM_003809328
- UniProtKB: A0A2R9A473 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_014197766   ⟸   XM_014342280
- UniProtKB: A0A2R9A473 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_034799803   ⟸   XM_034943912
- UniProtKB: A0A2R9A473 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSPPAP00000012093   ⟸   ENSPPAT00000034755
RefSeq Acc Id: ENSPPAP00000012095   ⟸   ENSPPAT00000034757
RefSeq Acc Id: ENSPPAP00000012099   ⟸   ENSPPAT00000034761
Protein Domains
Rho-GAP


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000029236 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000034755.1 UniProtKB/TrEMBL
  ENSPPAT00000034757.1 UniProtKB/TrEMBL
  ENSPPAT00000034761.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.555.10 UniProtKB/TrEMBL
  1.20.58.90 UniProtKB/TrEMBL
InterPro RALBP1 UniProtKB/TrEMBL
  RalBP1-like_Ral-bd UniProtKB/TrEMBL
  Rho_GTPase_activation_prot UniProtKB/TrEMBL
  RhoGAP_dom UniProtKB/TrEMBL
KEGG Report pps:100987155 UniProtKB/TrEMBL
NCBI Gene RALBP1 ENTREZGENE
PANTHER PTHR12783 UniProtKB/TrEMBL
  RALA-BINDING PROTEIN 1 UniProtKB/TrEMBL
Pfam RhoGAP UniProtKB/TrEMBL
  RLIP76_Ral-bd UniProtKB/TrEMBL
PROSITE RHOGAP UniProtKB/TrEMBL
SMART RhoGAP UniProtKB/TrEMBL
Superfamily-SCOP SSF48350 UniProtKB/TrEMBL
UniProt A0A2R9A473 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9A5F3_PANPA UniProtKB/TrEMBL
  A0A2R9A8X6_PANPA UniProtKB/TrEMBL