RXYLT1 (ribitol xylosyltransferase 1) - Rat Genome Database
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Gene: RXYLT1 (ribitol xylosyltransferase 1) Pan paniscus
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Symbol: RXYLT1
Name: ribitol xylosyltransferase 1
RGD ID: 11838013
Description: ENCODES a protein that exhibits ribitol beta-1,4-xylosyltransferase activity (ortholog); INVOLVED IN protein O-linked mannosylation (ortholog); ASSOCIATED WITH congenital muscular dystrophy-dystroglycanopathy type A10 (ortholog); Walker-Warburg syndrome (ortholog); FOUND IN Golgi apparatus (ortholog); nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: ribitol-5-phosphate xylosyltransferase 1; TMEM5; transmembrane protein 5; UDP-D-xylose:ribitol-5-phosphate beta1,4-xylosyltransferase
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11225,599,173 - 25,628,872 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1225,599,173 - 25,628,872 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01225,101,865 - 25,131,886 (-)NCBIMhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
RXYLT1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11225,599,173 - 25,628,872 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1225,599,173 - 25,628,872 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01225,101,865 - 25,131,886 (-)NCBIMhudiblu_PPA_v0panPan3
RXYLT1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1263,779,842 - 63,809,562 (+)EnsemblGRCh38hg38GRCh38
GRCh381263,779,831 - 63,809,562 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371264,173,689 - 64,203,342 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361262,459,904 - 62,489,154 (+)NCBINCBI36hg18NCBI36
Build 341262,459,903 - 62,489,154NCBI
Celera1263,838,644 - 63,867,894 (+)NCBI
Cytogenetic Map12q14.2NCBI
HuRef1261,224,906 - 61,255,033 (+)NCBIHuRef
CHM1_11264,141,305 - 64,171,061 (+)NCBICHM1_1
Rxylt1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3910121,916,844 - 121,933,271 (-)NCBIGRCm39mm39
GRCm39 Ensembl10121,914,019 - 121,933,276 (-)Ensembl
GRCm3810122,080,939 - 122,097,366 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl10122,078,114 - 122,097,371 (-)EnsemblGRCm38mm10GRCm38
MGSCv3710121,518,316 - 121,534,158 (-)NCBIGRCm37mm9NCBIm37
MGSCv3610121,484,320 - 121,500,162 (-)NCBImm8
Celera10124,470,597 - 124,486,440 (-)NCBICelera
Cytogenetic Map10D2NCBI
Rxylt1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2757,770,841 - 57,782,695 (-)NCBI
Rnor_6.0 Ensembl764,326,465 - 64,341,207 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0764,329,341 - 64,341,201 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0764,550,349 - 64,562,321 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4761,857,941 - 61,870,960 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1761,878,670 - 61,891,690 (-)NCBI
Celera754,952,923 - 54,964,657 (-)NCBICelera
Cytogenetic Map7q22NCBI
Rxylt1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545810,648,471 - 10,676,813 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545810,649,364 - 10,674,913 (+)NCBIChiLan1.0ChiLan1.0
RXYLT1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1106,630,076 - 6,648,387 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Rxylt1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365452,226,238 - 2,247,971 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RXYLT1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl528,247,412 - 28,276,273 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1528,247,409 - 28,276,276 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2531,433,526 - 31,462,220 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RXYLT1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11159,468,720 - 59,498,425 (+)NCBI
ChlSab1.1 Ensembl1159,468,714 - 59,500,249 (+)Ensembl
Rxylt1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248024,510,164 - 4,533,305 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000050747   ⟹   ENSPPAP00000027904
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1225,599,173 - 25,628,872 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000050748   ⟹   ENSPPAP00000027905
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1225,626,098 - 25,628,720 (-)Ensembl
RefSeq Acc Id: XM_003824810   ⟹   XP_003824858
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.11225,599,173 - 25,628,872 (-)NCBI
Mhudiblu_PPA_v01225,101,942 - 25,131,886 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008978448   ⟹   XP_008976696
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.11225,599,173 - 25,628,555 (-)NCBI
Mhudiblu_PPA_v01225,101,865 - 25,131,565 (-)NCBI
Sequence:
RefSeq Acc Id: XM_034935517   ⟹   XP_034791408
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v01225,101,942 - 25,129,136 (-)NCBI
Protein Sequences
Protein RefSeqs XP_003824858 (Get FASTA)   NCBI Sequence Viewer  
  XP_008976696 (Get FASTA)   NCBI Sequence Viewer  
  XP_034791408 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_003824858   ⟸   XM_003824810
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_008976696   ⟸   XM_008978448
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_034791408   ⟸   XM_034935517
- Peptide Label: isoform X2
RefSeq Acc Id: ENSPPAP00000027904   ⟸   ENSPPAT00000050747
RefSeq Acc Id: ENSPPAP00000027905   ⟸   ENSPPAT00000050748


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000037019 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSPPAP00000027904 UniProtKB/TrEMBL
  ENSPPAP00000027905 UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000050747 UniProtKB/TrEMBL
  ENSPPAT00000050748 UniProtKB/TrEMBL
KEGG Report pps:100992813 UniProtKB/TrEMBL
NCBI Gene TMEM5 ENTREZGENE
UniProt A0A2R9BE43_PANPA UniProtKB/TrEMBL
  A0A2R9BE48_PANPA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-12-19 RXYLT1  ribitol xylosyltransferase 1  TMEM5  transmembrane protein 5  Symbol and/or name change 5135510 APPROVED